Browse Element(s) Details


OsAffx.3094.1.S1_at

Description tigr:9630.m05720
TID=OsAffx.3094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein tyrosine-serine-threonine kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5744011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57410Os.9768.1.S2_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57410Os.9768.1.S1_a_at11/112+35172389..35178289OTU-like cysteine protease family protein, expressed
LOC_Os02g57420Os.33791.1.S1_at11/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57420OsAffx.2516.1.S1_at1/112+35184762..35188442Protein kinase domain containing protein, expressed
LOC_Os02g57430Os.33749.1.S1_at11/112+35193550..35195052zinc finger protein, putative, expressed
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3094.1.S1_at--372--7971Chr02:35199977..35200001 (25 bp)
GGATCGAGGGCACGCGCGGGTACAT
LOC_Os02g57440
OsAffx.3094.1.S1_at--188--4051Chr02:35200039..35200063 (25 bp)
CGATCCGACGTGTACGCGCTCGGCG
LOC_Os02g57440
OsAffx.3094.1.S1_at--828--8331Chr02:35200082..35200106 (25 bp)
TGTCCGGGCAGGAGGCGGTGAGGTA
LOC_Os02g57440
OsAffx.3094.1.S1_at--341--1171Chr02:35200130..35200154 (25 bp)
AGTACGAGAGGACGTCGGTGATCGA
LOC_Os02g57440
OsAffx.3094.1.S1_at--180--5771Chr02:35200140..35200164 (25 bp)
GACGTCGGTGATCGAGAGCGCGGAG
LOC_Os02g57440
OsAffx.3094.1.S1_at--1036--6111Chr02:35200221..35200245 (25 bp)
GAGGGACTCGTTCCCGGTGGAGGCG
LOC_Os02g57440
OsAffx.3094.1.S1_at--1122--2691Chr02:35200336..35200360 (25 bp)
AAGCTCTTCCTGGAGGCGCAGGATT
LOC_Os02g57440
OsAffx.3094.1.S1_at--1064--891Chr02:35200349..35200373 (25 bp)
AGGCGCAGGATTGGTCCGATAAGTT
LOC_Os02g57440
OsAffx.3094.1.S1_at--142--7911Chr02:35200356..35200380 (25 bp)
GGATTGGTCCGATAAGTTCCGCATC
LOC_Os02g57440
OsAffx.3094.1.S1_at--1126--11Chr02:35200358..35200382 (25 bp)
ATTGGTCCGATAAGTTCCGCATCCC
LOC_Os02g57440
OsAffx.3094.1.S1_at--817--8591Chr02:35200360..35200384 (25 bp)
TGGTCCGATAAGTTCCGCATCCCCA
LOC_Os02g57440
Target Sequence 
GGATCGAGGGCACGCGCGGGTACATGGCGCCGGAGCTCATCGCGGGCGCCGCCCCGTCGCGGCGATCCGACGTGTACGCG
CTCGGCGTCGTGCTGCTGGAGCTGGTGTCCGGGCAGGAGGCGGTGAGGTACGAGCAGAACAAGGCGACGGGGGAGTACGA
GAGGACGTCGGTGATCGAGAGCGCGGAGGCGGCGGCGGAGGGGGGAGGAGGGGAGGCGATGCGGCGGTGGGTGGACCGGA
GGCTGAGGGACTCGTTCCCGGTGGAGGCGGCGGAGGCGATGACGGCGGTGGCGCTGCGGTGCGTGGCGAGGGACGCGGCG
GCGCGGCCGGACATGTCGTGGGTCGCCGCCAAGGTGTCCAAGCTCTTCCTGGAGGCGCAGGATTGGTCCGATAAGTTCCG
CATCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis