Browse Element(s) Details


OsAffx.31018.3.S1_x_at

Description tigr:9629.m01856
TID=OsAffx.31018.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4094011/11hypothetical protein
LOC_Os05g3755011/11hypothetical protein
LOC_Os07g3210011/11hypothetical protein
LOC_Os01g1904011/11hypothetical protein
LOC_Os01g6304011/11hypothetical protein
LOC_Os04g5489011/11hypothetical protein
LOC_Os04g285907/11hypothetical protein
LOC_Os11g174407/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40890Os.7522.1.S1_at10/112+24774059..24776899expressed protein
LOC_Os02g40900Os.24611.1.S1_at11/112+24777346..24780675expressed protein
LOC_Os02g40910OsAffx.12437.1.S1_at11/112+24783662..24784196hypothetical protein
LOC_Os02g40920Os.26886.1.S1_x_at7/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920Os.26886.3.S1_x_at4/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40920OsAffx.16244.1.S1_x_at1/112+24789250..24792587transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.2.S1_s_at8/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930Os.26886.6.S1_s_at5/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40930OsAffx.3425.1.S1_at1/112+24795483..24798440transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g40940OsAffx.31018.3.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940OsAffx.31018.2.S1_x_at11/112+24801452..24805997hypothetical protein
LOC_Os02g40940Os.50578.1.S1_x_at7/112+24801452..24805997hypothetical protein
LOC_Os02g40950Os.45774.1.S1_at11/112+24806724..24809466transposon protein, putative, unclassified
LOC_Os02g41450Os.54416.1.S1_at6/112+24810863..24813949No apical meristem protein
LOC_Os02g41460NANA2+24824827..24826182expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31018.3.S1_x_at--110--7916Chr07:19072187..19072211 (25 bp)
GGTTGGAGGCATTTCATTAACCAAG
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--718--8016Chr07:19072191..19072215 (25 bp)
GGAGGCATTTCATTAACCAAGATTT
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--183--8297Chr07:19072194..19072218 (25 bp)
GGCATTTCATTAACCAAGATTTTGG
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--603--9557Chr07:19072200..19072295 (25 bp)
TCATTAACCAAGATTTTGGGATGTA
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--690--7618Chr07:19072585..19072609 (25 bp)
GGGAATCACGTTTCACCAGGCATGA
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--104--5258Chr07:19072587..19072611 (25 bp)
GAATCACGTTTCACCAGGCATGACA
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--1148--378Chr07:19072589..19072613 (25 bp)
ATCACGTTTCACCAGGCATGACAAG
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--1090--3338Chr07:19072591..19072615 (25 bp)
CACGTTTCACCAGGCATGACAAGAT
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--1086--10757Chr07:19073015..19073039 (25 bp)
TTGACTCTGCGTGATAACGAGGCAA
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--815--5717Chr07:19073017..19073041 (25 bp)
GACTCTGCGTGATAACGAGGCAATA
LOC_Os07g32100
OsAffx.31018.3.S1_x_at--902--3758Chr07:19073019..19073043 (25 bp)
CTCTGCGTGATAACGAGGCAATACT
LOC_Os07g32100
Target Sequence 
GGTTGGAGGCATTTCATTAACCAAGATTTTGGGATGTANGCNNTAGCTGGNGANGAATTTTGGGAAGCTAGNCATCAACT
TGCACACTTNNCGGGCCCNGANGTNGTATATGATGTTTNAGANAGNCACNTGATACTGATNCCTGTTCACCTANTCAANC
ATTACGTGNTGTACGTATTTAACATGGAGAGNAAGAAGNTATNNGTNCTTGATTCACTNAACACNNAAGATCCACTNGGG
GAATCACGTTTCACCAGGCATGACAAGATNAAGATCATGGTGTCNCNGTGNGTAATGGAATGCATGCGTCTNGCATNTCC
AGGGTGGAACANGGACATACTNAANTGGGACTTTGAGNCAGTNGAAAATATACCANAGCAGCANAACGGGGATGACTGNG
GCTTTNACGTATTCAACNNTATGGTGAACTNNGATGGTCNTCNTCTTNTGAACNCTANTNCANAGGACCCGTACTACCTC
CGGNGNCAATTTTTGATCCACCTNTTGACTCTGCGTGATAACGAGGCAATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31018.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis