Browse Element(s) Details


OsAffx.31036.1.S1_at

Description tigr:9639.m01667
TID=OsAffx.31036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g181009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18070OsAffx.28025.3.S1_at11/1111+10134698..10137988hypothetical protein
LOC_Os11g18070Os.20978.1.S1_at1/1111+10134698..10137988hypothetical protein
LOC_Os11g18080OsAffx.31892.1.S1_x_at5/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_x_at3/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.6363.1.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18100OsAffx.31036.1.S1_at9/1111+10159517..10161186hypothetical protein
LOC_Os11g18110OsAffx.7138.1.S1_at8/1111+10163142..10169710POT family protein
LOC_Os11g18120OsAffx.29410.1.S1_at9/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.13325.1.S1_at2/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_x_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18130OsAffx.18913.1.S1_at11/1111+10182071..10183029hypothetical protein
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31036.1.S1_at--858--4391Chr11:10159547..10159571 (25 bp)
GCCAACGTCTTGAACATGGTGAGCT
LOC_Os11g18100
OsAffx.31036.1.S1_at--747--3371Chr11:10159582..10159606 (25 bp)
CACCATGCACATGGGTGTCGCGGAG
LOC_Os11g18100
OsAffx.31036.1.S1_at--718--5731Chr11:10159615..10159639 (25 bp)
GACGGTGACCAACTTGTTCGCCGCG
LOC_Os11g18100
OsAffx.31036.1.S1_at--839--5851Chr11:10159621..10159645 (25 bp)
GACCAACTTGTTCGCCGCGTTGCAG
LOC_Os11g18100
OsAffx.31036.1.S1_at--333--3791Chr11:10159667..10159691 (25 bp)
CTCCTAGCTGACTCATACGTCAAAC
LOC_Os11g18100
OsAffx.31036.1.S1_at--124--1891Chr11:10159683..10159707 (25 bp)
ACGTCAAACGATTCTACACCGTCAT
LOC_Os11g18100
OsAffx.31036.1.S1_at--449--91Chr11:10159693..10159717 (25 bp)
ATTCTACACCGTCATCCTCTTGGCT
LOC_Os11g18100
OsAffx.31036.1.S1_at--681--9591Chr11:10159710..10159733 (24 bp)
TCTTGGCTCCCATCGAGATCATAGC
LOC_Os11g18100
OsAffx.31036.1.S1_at--579--511NONE
ATCGAGATCATAGCCGTCGCCAAGT
NONE
OsAffx.31036.1.S1_at--692--6031NONE
GAGATCATAGCCGTCGCCAAGTCCG
NONE
OsAffx.31036.1.S1_at--86--4391Chr11:10160538..10160562 (25 bp)
GCCAAGTCCGGCCAGATTTGGTGGA
LOC_Os11g18100
Target Sequence 
GCCAACGTCTTGAACATGGTGAGCTACCTCCGGGCCACCATGCACATGGGTGTCGCGGAGGCGACGACGACGGTGACCAA
CTTGTTCGCCGCGTTGCAGGTGTTCTCCATCCCGGCGGCCCTCCTAGCTGACTCATACGTCAAACGATTCTACACCGTCA
TCCTCTTGGCTCCCATCGAGATCATAGCCGTCGCCAAGTCCGGCCAGATTTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis