Browse Element(s) Details


OsAffx.31067.1.S1_at

Description tigr:9639.m01845
TID=OsAffx.31067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1976011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19720Os.53689.1.S1_at11/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19720Os.8839.2.S1_x_at1/1111+11339385..11346231recA protein, expressed
LOC_Os11g19730OsAffx.18947.1.S1_x_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.52025.1.S1_at11/1111+11350958..11354295expressed protein
LOC_Os11g19730Os.53168.1.S2_at1/1111+11350958..11354295expressed protein
LOC_Os11g19740NANA11+11357009..11357236hypothetical protein
LOC_Os11g19750OsAffx.31066.1.S1_at11/1111+11358928..11359502hypothetical protein
LOC_Os11g19760OsAffx.31067.1.S1_at11/1111+11360832..11361489hypothetical protein
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative
LOC_Os11g19780OsAffx.18948.1.S1_at11/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19780Os.55345.1.S1_at1/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19790OsAffx.18949.1.S1_at11/1111+11380615..11381951O-methyltransferase family protein
LOC_Os11g19800Os.46324.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19800OsAffx.31068.1.S1_at9/1111+11386131..11388863expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31067.1.S1_at--794--4411Chr11:11360862..11360886 (25 bp)
GCCAGCAGCCTTCGGAGATCAAAGT
LOC_Os11g19760
OsAffx.31067.1.S1_at--1123--2811Chr11:11360883..11361298 (25 bp)
AAGTTGGACATCACTGTGGTCCGCT
LOC_Os11g19760
OsAffx.31067.1.S1_at--1053--1951Chr11:11360895..11361310 (25 bp)
ACTGTGGTCCGCTCAAATGGTGTCG
LOC_Os11g19760
OsAffx.31067.1.S1_at--604--4831Chr11:11361296..11361320 (25 bp)
GCTCAAATGGTGTCGCGCAGTGTCG
LOC_Os11g19760
OsAffx.31067.1.S1_at--1069--3451Chr11:11361313..11361337 (25 bp)
CAGTGTCGGATCGATGGCGAGTATT
LOC_Os11g19760
OsAffx.31067.1.S1_at--279--6231Chr11:11361325..11361349 (25 bp)
GATGGCGAGTATTTAGTGATTGTCC
LOC_Os11g19760
OsAffx.31067.1.S1_at--119--191Chr11:11361335..11361359 (25 bp)
ATTTAGTGATTGTCCATGCCACCGC
LOC_Os11g19760
OsAffx.31067.1.S1_at--884--3351Chr11:11361354..11361378 (25 bp)
CACCGCCGCTTTCGTAGAAACTGGA
LOC_Os11g19760
OsAffx.31067.1.S1_at--1022--4871Chr11:11361361..11361385 (25 bp)
GCTTTCGTAGAAACTGGAACTGTTG
LOC_Os11g19760
OsAffx.31067.1.S1_at--159--2571Chr11:11361378..11361402 (25 bp)
AACTGTTGGTGTGGAGCTTACTCTC
LOC_Os11g19760
OsAffx.31067.1.S1_at--601--8531Chr11:11361389..11361413 (25 bp)
TGGAGCTTACTCTCCCACATCTTGG
LOC_Os11g19760
Target Sequence 
GCCAGCAGCCTTCGGAGATCAAAGTTGGACATCACTGTGGTCCGCTCAAATGGTGTCGCGCAGTGTCGGATCGATGGCGA
GTATTTAGTGATTGTCCATGCCACCGCCGCTTTCGTAGAAACTGGAACTGTTGGTGTGGAGCTTACTCTCCCACATCTTG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31067.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis