Browse Element(s) Details


OsAffx.31070.2.S1_at

Description tigr:9634.m03633
TID=OsAffx.31070.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3814011/11hypothetical protein
LOC_Os11g474481/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38120OsAffx.15812.1.S1_at11/116+22565778..22570505expressed protein
LOC_Os06g38130NANA6+22575955..22577194His Kinase A domain containing protein
LOC_Os06g38140OsAffx.31070.2.S1_x_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.2.S1_at11/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31069.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38140OsAffx.31070.1.S1_x_at1/116+22589634..22592651hypothetical protein
LOC_Os06g38150OsAffx.15814.1.S1_at11/116+22593566..22593928hypothetical protein
LOC_Os06g38160OsAffx.15815.1.S1_at11/116+22597674..22600260Legume lectins beta domain containing protein
LOC_Os06g38170Os.7582.1.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38170Os.31929.5.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38180NANA6+22604602..22605860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38190OsAffx.15816.1.S1_at10/116+22610892..22612283hypothetical protein
LOC_Os06g38200Os.52817.1.S1_at11/116+22613002..22615284expressed protein
LOC_Os06g38210Os.12027.1.S1_a_at6/116+22615947..22616270expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31070.2.S1_at--956--9251Chr06:22591766..22591790 (25 bp)
TCCGGCCTTCGATTATTCGGGGCTA
LOC_Os06g38140
OsAffx.31070.2.S1_at--840--7531Chr06:22591785..22591809 (25 bp)
GGGCTAGAGGACACGACCCTGGTCT
LOC_Os06g38140
OsAffx.31070.2.S1_at--1003--10031Chr06:22591789..22591813 (25 bp)
TAGAGGACACGACCCTGGTCTCTCC
LOC_Os06g38140
OsAffx.31070.2.S1_at--925--9512Chr11:28105214..28105319 (25 bp)
TCTCTCCTCGGGGTCTGGACAGCGA
LOC_Os11g47448
OsAffx.31070.2.S1_at--113--4431Chr06:22591933..22591957 (25 bp)
GCCAGGTGATGATCATTGCTCTAGC
LOC_Os06g38140
OsAffx.31070.2.S1_at--454--7751Chr06:22591937..22591961 (25 bp)
GGTGATGATCATTGCTCTAGCGACG
LOC_Os06g38140
OsAffx.31070.2.S1_at--935--711Chr06:22591941..22591965 (25 bp)
ATGATCATTGCTCTAGCGACGGCGA
LOC_Os06g38140
OsAffx.31070.2.S1_at--723--6432Chr06:22591943..22591967 (25 bp)
GATCATTGCTCTAGCGACGGCGAGC
LOC_Os06g38140
OsAffx.31070.2.S1_at--921--4071Chr06:22592202..22592226 (25 bp)
CGAGCAGCAGCGACGTTCCGAAGAA
LOC_Os06g38140
OsAffx.31070.2.S1_at--994--9591Chr06:22592260..22592282 (23 bp)
TCAGAAGGCGCCTAACCTGGCGGCC
LOC_Os06g38140
OsAffx.31070.2.S1_at--743--9791Chr06:22592272..22592364 (25 bp)
TAACCTGGCGGCCTCGGACATGTCC
LOC_Os06g38140
Target Sequence 
TCCGGCCTTCGATTATTCGGGGCTAGAGGACACGACCCTGGTCTCTCCTCGGGGTCTGGACAGCGACACCGTGGCATGCC
GCGTCAGCCAGGTGATGATCATTGCTCTAGCGACGGCGAGCGACGTCCCCGTACCCCTTTGCGAGAAGGGTCTGGCTGAA
CGCGAGGCTGCGATCAACGCTCTCCCTCTGATGGATGTCATCGGGCCACTCGCGGACCACCAGGCGGCGACGTCATTGAA
GGAGGGCGTCACCAAGGAGGCGTCCGACGTCGCTGCCGCCACTACCACGAGCAGCAGCGACGTTCCGAAGAAGGGGAGGA
AATTCTCCTCCATACTCGGGACCCGTCAGAAGGCGCCTAACCTGGCGGCCTCGGACATGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31070.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis