Browse Element(s) Details


OsAffx.31083.5.S1_s_at

Description tigr:9639.m04317
TID=OsAffx.31083.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2204011/11hypothetical protein
LOC_Os01g3641011/11hypothetical protein
LOC_Os11g4628011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22010Os.49936.2.A1_at3/1111+12170742..12177439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22010OsAffx.20631.1.S1_x_at2/1111+12170742..12177439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22010Os.33601.3.S1_x_at1/1111+12170742..12177439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22010Os.27102.1.S1_x_at1/1111+12170742..12177439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22010Os.33878.1.S1_at1/1111+12170742..12177439retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22020OsAffx.10496.1.S1_at1/1111+12177837..12180770retrotransposon protein, putative, unclassified
LOC_Os11g22020OsAffx.20565.1.S1_at1/1111+12177837..12180770retrotransposon protein, putative, unclassified
LOC_Os11g22030Os.54774.1.S1_at1/1111+12188243..12190844retrotransposon, putative, centromere-specific
LOC_Os11g22030Os.54774.1.S1_x_at1/1111+12188243..12190844retrotransposon, putative, centromere-specific
LOC_Os11g22040OsAffx.31083.5.S1_s_at11/1111+12193892..12194875hypothetical protein
LOC_Os11g22050NANA11+12196070..12196360hypothetical protein
LOC_Os11g22060Os.48015.1.A1_at1/1111+12198461..12198886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22060Os.48015.1.A1_x_at1/1111+12198461..12198886retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22070NANA11+12202174..12203162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22080NANA11+12203948..12204719retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22090NANA11+12205444..12205995hypothetical protein
LOC_Os11g22100NANA11+12208393..12210960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22110NANA11+12211526..12212017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22120NANA11+12212831..12213402hypothetical protein
LOC_Os11g22130OsAffx.12157.1.S1_at3/1111+12218278..12220466retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31083.5.S1_s_at--55--4593Chr11:12194152..12194176 (25 bp)
GCGCAAGGGTTTGGTTCGAGACTCA
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--115--5193Chr11:12194154..12194178 (25 bp)
GCAAGGGTTTGGTTCGAGACTCACC
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--339--1053Chr11:12194157..12194181 (25 bp)
AGGGTTTGGTTCGAGACTCACCGAG
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--297--6873Chr11:12194160..12194184 (25 bp)
GTTTGGTTCGAGACTCACCGAGGCA
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--952--10753Chr11:12194162..12194186 (25 bp)
TTGGTTCGAGACTCACCGAGGCAGC
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--885--7893Chr11:12194164..12194188 (25 bp)
GGTTCGAGACTCACCGAGGCAGCGA
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--556--4073Chr11:12194168..12194192 (25 bp)
CGAGACTCACCGAGGCAGCGACTTG
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--422--3753Chr11:12194173..12194197 (25 bp)
CTCACCGAGGCAGCGACTTGACGGG
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--998--8093Chr11:12194181..12194205 (25 bp)
GGCAGCGACTTGACGGGTGCGGGTT
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--181--9133Chr11:12194198..12194222 (25 bp)
TGCGGGTTGGCGGTCGCGCCCTGTT
LOC_Os11g22040
OsAffx.31083.5.S1_s_at--1057--4633Chr11:12194253..12194277 (25 bp)
GCGTTCCCGGCGAATCAGAGGGTTT
LOC_Os11g22040
Target Sequence 
GCGCAAGGGTTTGGTTCGAGACTCACCGAGGCAGCGACTTGACGGGTGCGGGTTGGCGGTCGCGCCCTGTTCGGCCGACG
CGGGGCGTGACGATGGCGCGGGCGTTCCCGGCGAATCAGAGGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31083.5.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis