Browse Element(s) Details


OsAffx.31090.1.S1_at

Description tigr:9639.m02019
TID=OsAffx.31090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2248011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22450OsAffx.20451.1.S1_at1/1111+12420245..12420869hypothetical protein
LOC_Os11g22460NANA11+12426563..12427120hypothetical protein
LOC_Os11g22470OsAffx.17095.1.S1_at10/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_x_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.7645.1.S1_at1/1111+12439334..12440720hypothetical protein
LOC_Os11g22480OsAffx.31090.1.S1_at11/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.26058.1.S1_at2/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.23458.1.S1_x_at1/1111+12441685..12444042hypothetical protein
LOC_Os11g22490OsAffx.31091.1.S1_x_at11/1111+12447975..12448392hypothetical protein
LOC_Os11g22500NANA11+12454116..12455323hypothetical protein
LOC_Os11g22510OsAffx.9652.1.S1_x_at2/1111+12457088..12461009hypothetical protein
LOC_Os11g22510OsAffx.20947.1.S1_x_at1/1111+12457088..12461009hypothetical protein
LOC_Os11g22530OsAffx.13733.1.S1_at2/1111+12461434..12470044retrotransposon protein, putative, unclassified
LOC_Os11g22530OsAffx.20553.1.S1_at1/1111+12461434..12470044retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31090.1.S1_at--415--1711Chr11:12442242..12442266 (25 bp)
ACCAACGCTCCTCGTCGAAGAATAC
LOC_Os11g22480
OsAffx.31090.1.S1_at--1078--4771Chr11:12442236..12442260 (25 bp)
GCTCCTCGTCGAAGAATACCCAGTT
LOC_Os11g22480
OsAffx.31090.1.S1_at--87--1471Chr11:12442224..12442248 (25 bp)
AGAATACCCAGTTTGCAGCTGATGA
LOC_Os11g22480
OsAffx.31090.1.S1_at--557--311Chr11:12442221..12442245 (25 bp)
ATACCCAGTTTGCAGCTGATGAGGG
LOC_Os11g22480
OsAffx.31090.1.S1_at--55--5491Chr11:12442034..12442058 (25 bp)
GAACAGTTATATGCCAACCGATTGA
LOC_Os11g22480
OsAffx.31090.1.S1_at--664--3231Chr11:12441835..12441859 (25 bp)
CAAGACATGTGAGGTCGATGGCAAT
LOC_Os11g22480
OsAffx.31090.1.S1_at--339--9931Chr11:12441811..12441835 (25 bp)
TACTGGTCACTCTGGCACGGATTGT
LOC_Os11g22480
OsAffx.31090.1.S1_at--933--7091Chr11:12441806..12441830 (25 bp)
GTCACTCTGGCACGGATTGTCGGAA
LOC_Os11g22480
OsAffx.31090.1.S1_at--1156--8471Chr11:12441799..12441823 (25 bp)
TGGCACGGATTGTCGGAAAACCTGT
LOC_Os11g22480
OsAffx.31090.1.S1_at--433--10471Chr11:12441790..12441814 (25 bp)
TTGTCGGAAAACCTGTGAGAACGTC
LOC_Os11g22480
OsAffx.31090.1.S1_at--745--8151Chr11:12441785..12441809 (25 bp)
GGAAAACCTGTGAGAACGTCAAGCT
LOC_Os11g22480
Target Sequence 
ACCAACGCTCCTCGTCGAAGAATACCCAGTTTGCAGCTGATGAGGGATGAAACCATTCTTAAAGCTTGGGAAAGGCTGCA
GGAATACGTCACCACCCGTCCTCATCATGAGATGGCCGAGTGGCTCATCCTGCAGAGTTTCTTCAACGGATTAACCCCCT
CGTCCTGGGATCACCTGGATGCTGCTGCTGGAGGGACATTCTTCTCAAGAACAGTTATATGCCAACCGATTGAGAAGATG
CTCTCAAATAAGGGGTGGAGCAAGGAACGACTCCAAACCCGTCAATGCGACATGTACACCGTCAAGTGGACGGAAATGCT
AGCCGCTCAGTTGGATCTCCTTATGAGGAGACTGGACAACAATGAGAAGGACGCCGAGCAGGGTACCGTTAAGGCCATGG
ACTCTCACAAGACATGTGAGGTCGATGGCAATACTGGTCACTCTGGCACGGATTGTCGGAAAACCTGTGAGAACGTCAAG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis