Browse Element(s) Details


OsAffx.31091.1.S1_x_at

Description tigr:9639.m02020
TID=OsAffx.31091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2249011/11hypothetical protein
LOC_Os03g334903/11hypothetical protein
LOC_Os02g243901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22460NANA11+12426563..12427120hypothetical protein
LOC_Os11g22470OsAffx.17095.1.S1_at10/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_x_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.7645.1.S1_at1/1111+12439334..12440720hypothetical protein
LOC_Os11g22480OsAffx.31090.1.S1_at11/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.26058.1.S1_at2/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.23458.1.S1_x_at1/1111+12441685..12444042hypothetical protein
LOC_Os11g22490OsAffx.31091.1.S1_x_at11/1111+12447975..12448392hypothetical protein
LOC_Os11g22500NANA11+12454116..12455323hypothetical protein
LOC_Os11g22510OsAffx.9652.1.S1_x_at2/1111+12457088..12461009hypothetical protein
LOC_Os11g22510OsAffx.20947.1.S1_x_at1/1111+12457088..12461009hypothetical protein
LOC_Os11g22530OsAffx.13733.1.S1_at2/1111+12461434..12470044retrotransposon protein, putative, unclassified
LOC_Os11g22530OsAffx.20553.1.S1_at1/1111+12461434..12470044retrotransposon protein, putative, unclassified
LOC_Os11g22540Os.45173.1.S1_x_at4/1111+12471423..12480166retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31091.1.S1_x_at--882--4871Chr11:12448313..12448337 (25 bp)
GCTTTCCGGCGATCTTTGGTGAAGA
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--6--5371Chr11:12448199..12448219 (21 bp)
GAAGAGAGATCAAACCAAGGCAACA
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--313--3211Chr11:12448184..12448208 (25 bp)
CAAGGCAACAACCAACGGGTTCACG
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--14--10871Chr11:12448135..12448159 (25 bp)
TTGGCGCAAAAGAACTGGCGGCCAT
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--442--2571Chr11:12448123..12448147 (25 bp)
AACTGGCGGCCATGGTAGAGATCAA
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--1003--8432Chr11:12448116..12448140 (25 bp)
GGCCATGGTAGAGATCAACCTTGCG
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--221--10033Chr11:12448108..12448132 (25 bp)
TAGAGATCAACCTTGCGGAGCGGAG
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--645--1071Chr11:12448085..12448109 (25 bp)
AGGGAGGTGGCGTCACTGATCGAGA
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--91--8031Chr11:12448083..12448107 (25 bp)
GGAGGTGGCGTCACTGATCGAGAAC
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--559--7091Chr11:12448074..12448098 (25 bp)
GTCACTGATCGAGAACGGCCGGCGT
LOC_Os11g22490
OsAffx.31091.1.S1_x_at--386--8053Chr12:10695624..10695662 (25 bp)
GGAGAGAGAAAACGGCGCCGGATCG
NONE
Target Sequence 
GCTTTCCGGCGATCTTTGGTGAAGAAGAGAGATCAAACCAAGGCAACAACCAACGGGTTCACGGTGACGGCAACCTTCCG
GCGGGATTTGGCGCAAAAGAACTGGCGGCCATGGTAGAGATCAACCTTGCGGAGCGGAGGGAGGTGGCGTCACTGATCGA
GAACGGCCGGCGTGACGGGAAAAGGCGGCTGAAGATGGCGGCCGGAGTTGGAGAGAGAAAACGGCGCCGGATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31091.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis