Browse Element(s) Details


OsAffx.31104.1.S1_at

Description tigr:9639.m02132
TID=OsAffx.31104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine carboxypeptidase I, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2418011/11sinapoylglucose:choline sinapoyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24170OsAffx.18982.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24170Os.17696.1.S1_at11/1111+13243685..13249321NB-ARC domain containing protein
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24190OsAffx.18983.1.S1_at11/1111+13280060..13280506hypothetical protein
LOC_Os11g24200OsAffx.31105.1.S1_at11/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24200Os.25547.1.S1_at9/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31104.1.S1_at--395--351Chr11:13273565..13273589 (25 bp)
ATAACAAGTGCATCGCGGTGTCTCC
LOC_Os11g24180
OsAffx.31104.1.S1_at--992--3971Chr11:13273550..13273574 (25 bp)
CGGTGTCTCCAGGACCAAGTGATGT
LOC_Os11g24180
OsAffx.31104.1.S1_at--292--3791Chr11:13273473..13273496 (24 bp)
CTCGTCCTCCGATTGAATGCATTGA
LOC_Os11g24180
OsAffx.31104.1.S1_at--332--6991Chr11:13272625..13272649 (25 bp)
GTACCCGCACTATCTGTTGTATTTT
LOC_Os11g24180
OsAffx.31104.1.S1_at--246--7911Chr11:13272371..13272395 (25 bp)
GGTTGCATCACTGAATTACCGAACT
LOC_Os11g24180
OsAffx.31104.1.S1_at--614--1091Chr11:13271691..13271715 (25 bp)
AGTGGCGACCATGATGCTGTTCTGC
LOC_Os11g24180
OsAffx.31104.1.S1_at--240--8791Chr11:13271674..13271698 (25 bp)
TGTTCTGCCATTTCTTAGTACCCAA
LOC_Os11g24180
OsAffx.31104.1.S1_at--989--8891Chr11:13271642..13271666 (25 bp)
TGAGATCACTCAGCGACCACATTGT
LOC_Os11g24180
OsAffx.31104.1.S1_at--545--7171Chr11:13271446..13271608 (25 bp)
GTCTGCAGGATTCACCATGACGTAT
LOC_Os11g24180
OsAffx.31104.1.S1_at--577--2231Chr11:13271417..13271441 (25 bp)
ACAATGTGACGTTCGCTACTGTGAA
LOC_Os11g24180
OsAffx.31104.1.S1_at--88--1191Chr11:13270545..13270569 (25 bp)
AGTAGTGTCCACCACAAAGGCTATT
LOC_Os11g24180
Target Sequence 
ATAACAAGTGCATCGCGGTGTCTCCAGGACCAAGTGATGTAAGTAGAAGAAAGATCTTGAACGAGGAGGTTGACTTACTG
CAAAACCCACCACCTCGTCCTCCGATTGAATGCATTGAGTACCCGCACTATCTGTTGTATTTTTGGGTTAACAATAATGC
CACACGTGAAACTCTTGGGATCAAGAAGGGGACCGTGAATGAGTGGGTGAGGTGCCACCAAGGGGATCTACCTTATGATG
AGGATATCGTAAACGGCATAGAGTATCATCGTAAGGTTGCATCACTGAATTACCGAACTTTGGTATATAGTGGCGACCAT
GATGCTGTTCTGCCATTTCTTAGTACCCAAGCATGGGTGAGATCACTCAGCGACCACATTGTGGATGACTGGAGGGCCTG
GCATCTTGATGGCCAGTCTGCAGGATTCACCATGACGTATGGAAACAATGTGACGTTCGCTACTGTGAAGGATTGGGTTC
CCAACCCATGGTATCGAACACAGCCTATTCTAAGTAGTGTCCACCACAAAGGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis