Browse Element(s) Details


OsAffx.31108.1.S1_at

Description tigr:9639.m02146
TID=OsAffx.31108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2431011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24270NANA11+13321993..13326513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24280Os.46012.2.S1_x_at2/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.27088.1.A1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.46012.3.S1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24290OsAffx.7186.1.S1_at11/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24290Os.37752.1.S1_at1/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24300OsAffx.31761.2.S1_at11/1111+13344376..13348496hypothetical protein
LOC_Os11g24300OsAffx.10665.2.S1_at1/1111+13344376..13348496hypothetical protein
LOC_Os11g24310OsAffx.31108.1.S1_at11/1111+13350550..13350876hypothetical protein
LOC_Os11g24320OsAffx.31109.1.S1_at11/1111+13352448..13356167hypothetical protein
LOC_Os11g24330NANA11+13357999..13360105retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24340OsAffx.18987.1.S1_at11/1111+13364180..13368847Serine carboxypeptidase family protein, expressed
LOC_Os11g24350OsAffx.7149.1.S1_at1/1111+13371643..13379209retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31108.1.S1_at--417--1751Chr11:13350596..13350620 (25 bp)
ACCTACCAACGCGTGAGGGTGAGCG
LOC_Os11g24310
OsAffx.31108.1.S1_at--1068--8911Chr11:13350615..13350639 (25 bp)
TGAGCGCTCGCGTGTGCCGCACACA
LOC_Os11g24310
OsAffx.31108.1.S1_at--790--3991Chr11:13350625..13350649 (25 bp)
CGTGTGCCGCACACAGTGCTCGGGC
LOC_Os11g24310
OsAffx.31108.1.S1_at--834--9171Chr11:13350629..13350653 (25 bp)
TGCCGCACACAGTGCTCGGGCTCGG
LOC_Os11g24310
OsAffx.31108.1.S1_at--484--9431Chr11:13350644..13350668 (25 bp)
TCGGGCTCGGCTGGGCGCGGGAAGA
LOC_Os11g24310
OsAffx.31108.1.S1_at--595--4671Chr11:13350684..13350708 (25 bp)
GCGGGAGCAGGCCAAGTGGAGGGAA
LOC_Os11g24310
OsAffx.31108.1.S1_at--940--2331Chr11:13350758..13350782 (25 bp)
AAAGAGGTGGCTGGCCTAGACCAGG
LOC_Os11g24310
OsAffx.31108.1.S1_at--215--7511Chr11:13350796..13350820 (25 bp)
GTGGAAAAGGACACCTTGGGCCAGA
LOC_Os11g24310
OsAffx.31108.1.S1_at--204--2311Chr11:13350801..13350825 (25 bp)
AAAGGACACCTTGGGCCAGATTCGG
LOC_Os11g24310
OsAffx.31108.1.S1_at--1060--5631Chr11:13350805..13350829 (25 bp)
GACACCTTGGGCCAGATTCGGCGCA
LOC_Os11g24310
OsAffx.31108.1.S1_at--173--1731Chr11:13350808..13350832 (25 bp)
ACCTTGGGCCAGATTCGGCGCAAGA
LOC_Os11g24310
Target Sequence 
ACCTACCAACGCGTGAGGGTGAGCGCTCGCGTGTGCCGCACACAGTGCTCGGGCTCGGCTGGGCGCGGGAAGAGGAGATG
GGGCACGTGCGGGAGCAGGCCAAGTGGAGGGAAGGAGGGAAAGAATGGGCCAAGAAGGGGGAGGCCCGGAAGGAGGGAGG
GGAAAGAGGTGGCTGGCCTAGACCAGGAGGGGTGAAGAGGGTGGAAAAGGACACCTTGGGCCAGATTCGGCGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis