Browse Element(s) Details


OsAffx.31115.1.S1_at

Description tigr:9639.m02184
TID=OsAffx.31115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g246809/11hypothetical protein
LOC_Os09g168991/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24630Os.53661.1.S1_s_at11/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630Os.53661.1.S1_at10/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24630OsAffx.31112.1.S1_at9/1111+13548291..13552225HAD-superfamily phosphatase, subfamily IIIC containing protein, expressed
LOC_Os11g24640OsAffx.18994.1.S1_at10/1111+13555405..13557286hypothetical protein
LOC_Os11g24640Os.55580.1.S1_at1/1111+13555405..13557286hypothetical protein
LOC_Os11g24650OsAffx.31113.1.S1_at11/1111+13561000..13561713hypothetical protein
LOC_Os11g24660NANA11+13566725..13567105retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24670OsAffx.31114.1.S1_at11/1111+13569737..13570989hypothetical protein
LOC_Os11g24680OsAffx.31115.1.S1_at9/1111+13573321..13574389hypothetical protein
LOC_Os11g24690OsAffx.7191.1.S1_at11/1111+13578949..13579826hypothetical protein
LOC_Os11g24700Os.51476.1.S1_x_at9/1111+13580659..13581140expressed protein
LOC_Os11g24710OsAffx.31116.1.S1_at11/1111+13581683..13581880NA
LOC_Os11g24720OsAffx.31117.1.S1_at11/1111+13584452..13586251ankyrin repeat family protein, putative
LOC_Os11g24730OsAffx.18995.1.S1_at11/1111+13591347..13592150protein kinase, putative
LOC_Os11g24740OsAffx.31118.1.S1_at11/1111+13596239..13596660hypothetical protein
LOC_Os11g24750OsAffx.31119.1.S1_at11/1111+13597207..13598520hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31115.1.S1_at--756--7871Chr11:13573370..13573394 (25 bp)
GGTTAAGGCGAAGGCACTACTTCAG
LOC_Os11g24680
OsAffx.31115.1.S1_at--435--10451Chr11:13573442..13573466 (25 bp)
TTACCTGGGCCAATAGTAACAACAA
LOC_Os11g24680
OsAffx.31115.1.S1_at--877--7271Chr11:13573448..13573472 (25 bp)
GGGCCAATAGTAACAACAAGCGGTT
LOC_Os11g24680
OsAffx.31115.1.S1_at--1143--9811Chr11:13573458..13573482 (25 bp)
TAACAACAAGCGGTTGCTCCACGTT
LOC_Os11g24680
OsAffx.31115.1.S1_at--966--2451Chr11:13573462..13573486 (25 bp)
AACAAGCGGTTGCTCCACGTTGGCG
LOC_Os11g24680
OsAffx.31115.1.S1_at--668--2671Chr11:13573465..13573489 (25 bp)
AAGCGGTTGCTCCACGTTGGCGACA
LOC_Os11g24680
OsAffx.31115.1.S1_at--892--6671Chr11:13573470..13573494 (25 bp)
GTTGCTCCACGTTGGCGACATTGAT
LOC_Os11g24680
OsAffx.31115.1.S1_at--380--7535Chr11:13573666..13573690 (25 bp)
GTGGCTGGCCGTAGAGGATAGGGTG
LOC_Os11g24680
OsAffx.31115.1.S1_at--461--8551NONE
TGGAGTCCACCGGTATGGCGTTATA
NONE
OsAffx.31115.1.S1_at--925--1111NONE
AGTCCACCGGTATGGCGTTATACGA
NONE
OsAffx.31115.1.S1_at--306--3371Chr11:13574339..13574359 (21 bp)
CACCGGTATGGCGTTATACGAGAAT
LOC_Os11g24680
Target Sequence 
GGTTAAGGCGAAGGCACTACTTCAGGCCTCGCTGCTGGACGCTAGGCAACATCTTAACCAGCAAGGAGGTCTTTACCTGG
GCCAATAGTAACAACAAGCGGTTGCTCCACGTTGGCGACATTGATAGAACAAGCAAGTCCTACATTTGCACATCGTACTC
CATGTGGCTGGCCGTAGAGGATAGGGTGGAGTCCACCGGTATGGCGTTATACGAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis