Browse Element(s) Details


OsAffx.31153.1.S1_x_at

Description tigr:9639.m02415
TID=OsAffx.31153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2699011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26956NANA11+15008414..15008995hypothetical protein
LOC_Os11g26962Os.49350.1.S1_at1/1111+15012727..15013784NA
LOC_Os11g26970Os.6901.1.S1_at1/1111+15017628..15019724hypothetical protein
LOC_Os11g26980NANA11+15021510..15023184hypothetical protein
LOC_Os11g26990OsAffx.31153.1.S1_x_at11/1111+15031227..15033569expressed protein
LOC_Os11g26990Os.51855.1.S1_at10/1111+15031227..15033569expressed protein
LOC_Os11g27000OsAffx.7213.1.S1_at11/1111+15052590..15053912hypothetical protein
LOC_Os11g27010OsAffx.31154.1.S1_at11/1111+15056926..15057252hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31153.1.S1_x_at--813--2911Chr11:15032063..15032087 (25 bp)
AAGGACGCGGCGGACCAAGAATCTC
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--1149--2711Chr11:15032047..15032071 (25 bp)
AAGAATCTCCAAGGGAGGATCCCCT
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--700--8111Chr11:15031918..15031942 (25 bp)
GGACGTTGGCGTGCAAGCTCTACGA
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--695--6191Chr11:15031895..15031919 (25 bp)
GAGGAACGGATGCAGCTCAAGCTCC
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--905--7211Chr11:15031853..15031877 (25 bp)
GTCGAGTCGTCCAGCGACAACATGG
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--551--2091Chr11:15031834..15031858 (25 bp)
ACATGGACATGCTCTGGGAGGCCTA
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--217--5171Chr11:15031747..15031771 (25 bp)
GCAAGCAAGAACGAGCCACCGTCGA
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--954--1691Chr11:15031734..15031758 (25 bp)
AGCCACCGTCGAACGCAAGCAAGAA
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--568--2751Chr11:15031714..15031738 (25 bp)
AAGAACACGCGACCGCCGACGAGGA
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--817--911Chr11:15031630..15031654 (25 bp)
AGGCTCTCAAGTTCTCGACGAGGAA
LOC_Os11g26990
OsAffx.31153.1.S1_x_at--242--8231Chr11:15031583..15031607 (25 bp)
GGCAAGCCGAGCCTGGCCAAGATCT
LOC_Os11g26990
Target Sequence 
AAGGACGCGGCGGACCAAGAATCTCCAAGGGAGGATCCCCTCCGGCCGTCGACGTCGATCGCGCGGCGGGTGCACTCGCG
GACGTCGTCGGAGCACCTCCTCGTCGTCGGCGAGGGGTCGCCGCGGAAGGAGAAGGAGTGGAAGCGGACGTTGGCGTGCA
AGCTCTACGAGGAACGGATGCAGCTCAAGCTCCGCCGCGACCGCGCCGTCGTCGAGTCGTCCAGCGACAACATGGACATG
CTCTGGGAGGCCTACGAGGTCGGCGGCGGCGGCGGCGGCGCCACCTCCACCAAGGGCGGCGCCAGCAAGGCGAAACGCAA
GCAAGAACGAGCCACCGTCGAACGCAAGCAAGAACACGCGACCGCCGACGAGGAAGACGACGACGACGACGGCGACGAGG
AGGAAGGCTCGGTGAGGCAGCTCTGCTGCCTCCAGGCTCTCAAGTTCTCGACGAGGAAGATGAGCTTCGGCGGCGGCGGC
GGCAAGCCGAGCCTGGCCAAGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31153.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis