Browse Element(s) Details


OsAffx.31159.1.S1_at

Description tigr:9639.m02442
TID=OsAffx.31159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2725010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27180OsAffx.20387.1.S1_x_at2/1111+15143610..15147606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27190Os.25754.2.S1_x_at2/1111+15148400..15151232retrotransposon protein, putative, unclassified
LOC_Os11g27190OsAffx.31069.2.S1_x_at1/1111+15148400..15151232retrotransposon protein, putative, unclassified
LOC_Os11g27200OsAffx.31157.1.S1_at10/1111+15151727..15156685transposon protein, putative, unclassified
LOC_Os11g27210OsAffx.380.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27210OsAffx.25972.1.S1_at1/1111+15158597..15164720retrotransposon protein, putative, unclassified
LOC_Os11g27220OsAffx.31158.1.S1_at2/1111+15165446..15166625hypothetical protein
LOC_Os11g27240Os.54866.1.S1_at11/1111+15167385..15170454pentatricopeptide, putative, expressed
LOC_Os11g27250Os.49957.1.S1_at11/1111+15172412..15179933expressed protein
LOC_Os11g27250OsAffx.31159.1.S1_at10/1111+15172412..15179933expressed protein
LOC_Os11g27250OsAffx.29095.1.S1_at1/1111+15172412..15179933expressed protein
LOC_Os11g27250Os.34903.1.S1_at1/1111+15172412..15179933expressed protein
LOC_Os11g27264Os.10644.1.S1_at10/1111+15182780..15194588Serine carboxypeptidase family protein, expressed
LOC_Os11g27264OsAffx.9287.1.S1_at1/1111+15182780..15194588Serine carboxypeptidase family protein, expressed
LOC_Os11g27280Os.47463.1.S1_x_at1/1111+15195727..15196388transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g27280Os.14491.2.S1_x_at1/1111+15195727..15196388transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g27290NANA11+15196799..15198358transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g27300NANA11+15201011..15201391hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31159.1.S1_at--475--551NONE
ATCCCCATGCTGTCGTGAACCCAAA
NONE
OsAffx.31159.1.S1_at--839--6151Chr11:15178453..15178477 (25 bp)
GAGGTACCTGTTTATGTTTCATGCA
LOC_Os11g27250
OsAffx.31159.1.S1_at--225--6831Chr11:15178468..15178616 (25 bp)
GTTTCATGCACTTCAGAATGTACAC
LOC_Os11g27250
OsAffx.31159.1.S1_at--733--751Chr11:15178609..15178633 (25 bp)
ATGTACACACTGATGGTTCTGAAGA
LOC_Os11g27250
OsAffx.31159.1.S1_at--205--1111Chr11:15179139..15179598 (25 bp)
AGTGTATGCAGGACTTCTTTGCCGC
LOC_Os11g27250
OsAffx.31159.1.S1_at--1072--431Chr11:15179636..15179660 (25 bp)
ATCTTCATCGCACATGGGCATCGGT
LOC_Os11g27250
OsAffx.31159.1.S1_at--522--8651Chr11:15179650..15179674 (25 bp)
TGGGCATCGGTTCTCACACTGCGGA
LOC_Os11g27250
OsAffx.31159.1.S1_at--217--9691Chr11:15179663..15179687 (25 bp)
TCACACTGCGGAGGTCATTGACAAC
LOC_Os11g27250
OsAffx.31159.1.S1_at--920--2191Chr11:15179686..15179710 (25 bp)
ACAAAGAATGTGACACCGCCGGCGG
LOC_Os11g27250
OsAffx.31159.1.S1_at--301--9491Chr11:15179765..15179789 (25 bp)
TCTCCACCCGTTGGATCTGGTAGAG
LOC_Os11g27250
OsAffx.31159.1.S1_at--305--4211Chr11:15179845..15179869 (25 bp)
CCCCTTCCGCTGGATCTGGTAGAGT
LOC_Os11g27250
Target Sequence 
ATCCCCATGCTGTCGTGAACCCAAACGACGTTATTCCCTTCTCAAGATCAGCTCAATGGAATCGAACATGAGGTACCTGT
TTATGTTTCATGCACTTCAGAATGTACACACTGATGGTTCTGAAGAATTTGAACCAAATGACCTGGATCAACAAAGTATT
GACGAACTAATGGCAGAGAATAACTTGAAAAAGTTGACCTTTGCAAGAAAGGATTTTAAAACCGAAGACGACAGTGTATG
CAGGACTTCTTTGCCGCCACCTTCTGCTTCTACGCCACCACCTACCAGTCCACCATCTTCATCGCACATGGGCATCGGTT
CTCACACTGCGGAGGTCATTGACAACAAAGAATGTGACACCGCCGGCGGGGAGGGGAGGATGCTGCACCCCTACCACCGC
CTCCCTGTGGGGAGCCTGCTGCCTCTCCACCCGTTGGATCTGGTAGAGGGGAGGGCACCCCTGCCTCCTGCCACCCCTCC
TCGGGTGCCGTCGCCTACCGCCTCCCCTTCCGCTGGATCTGGTAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis