Browse Element(s) Details


OsAffx.31184.1.S1_at

Description tigr:9639.m02571
TID=OsAffx.31184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2848010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein
LOC_Os11g28490OsAffx.31186.1.S1_at11/1111+15906020..15907595Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein
LOC_Os11g28510OsAffx.31187.1.S1_at11/1111+15916227..15916718hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31184.1.S1_at--603--9871Chr11:15889557..15889581 (25 bp)
TACATTACATCCATACTCGCTAGAA
LOC_Os11g28480
OsAffx.31184.1.S1_at--397--10011NONE
TAGAATGGACTATCAGGTCCCCTCT
NONE
OsAffx.31184.1.S1_at--243--7071Chr11:15888625..15888649 (25 bp)
GTAATGTCAAGCTCCGTGTGGCAGA
LOC_Os11g28480
OsAffx.31184.1.S1_at--611--10131Chr11:15888548..15888572 (25 bp)
TATCCTCTCCTGACAACGGACGGGA
LOC_Os11g28480
OsAffx.31184.1.S1_at--634--7071Chr11:15888481..15888505 (25 bp)
GTAATCTTGCTGGATCTGATCGCGA
LOC_Os11g28480
OsAffx.31184.1.S1_at--170--2631Chr11:15887739..15887763 (25 bp)
AACCGGTGCAAGTGATAGCTGCCAA
LOC_Os11g28480
OsAffx.31184.1.S1_at--136--8651Chr11:15886831..15886855 (25 bp)
TGGGAGCATTTCCTTGTTGCCAGCA
LOC_Os11g28480
OsAffx.31184.1.S1_at--1119--6672Chr06:2810979..2810998 (20 bp)
GTTGCCAGCACGTACGAGAATCATG
NONE
OsAffx.31184.1.S1_at--180--9631Chr11:15886796..15886820 (25 bp)
TCATGGATCCTGATTCTGTCGGATT
LOC_Os11g28480
OsAffx.31184.1.S1_at--271--9891Chr11:15886738..15886762 (25 bp)
TACATTTGTGTTCTATCGTTCTGCA
LOC_Os11g28480
OsAffx.31184.1.S1_at--192--6732Chr03:6259439..6259782 (25 bp)
GTTCTGCACTTCTATCACTTGGATT
NONE
Target Sequence 
TACATTACATCCATACTCGCTAGAATGGACTATCAGGTCCCCTCTCCCCAAGCGGAGGGCGAAGATATCAGTAATGTCAA
GCTCCGTGTGGCAGAGGATGATGAGCTCGAAGCTCTCTCCCCTCTCTACCGGCGAGCTTGGGCTCTCTATCCTCTCCTGA
CAACGGACGGGAGACCGCAGCAGCGACGACGACAGCCAGCTCGTCATATCAGCTGTAATCTTGCTGGATCTGATCGCGAC
CTCAGCGAGCAGGTCAACCGGTGGAGGGGTCCCTGCACAACCGGTGCAAGTGATAGCTGCCAATGGCTAGAGGGAAAGAA
GAACAACATGAGGCACGACAGCCAGAGAGAATGGAAAGATAGAATGGGGAAGCAGTCAGAGAAGAAAGAAAAAGAGAGCT
CCAAGCCAGAAGTAGAAGAGTTTGGGAGCATTTCCTTGTTGCCAGCACGTACGAGAATCATGGATCCTGATTCTGTCGGA
TTGGCAAAACATCAAGACTGGAGTTTTATCACTCATACATTTGTGTTCTATCGTTCTGCACTTCTATCACTTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis