Browse Element(s) Details


OsAffx.31194.1.S1_at

Description tigr:9639.m02619
TID=OsAffx.31194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2900010/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed
LOC_Os11g28970Os.54774.1.S1_x_at3/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28970Os.54774.1.S1_at2/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed
LOC_Os11g28990NANA11+16273337..16277985RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os11g29000OsAffx.31194.1.S1_at10/1111+16280218..16282944Leucine Rich Repeat family protein
LOC_Os11g29014OsAffx.19061.1.S1_at11/1111+16290272..16295159retrotransposon protein, putative, unclassified
LOC_Os11g29030OsAffx.7242.1.S1_s_at11/1111+16306262..16307525disease resistance protein RPM1 homolog, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0005886cellular_componentplasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31194.1.S1_at--670--8951Chr11:16280909..16280933 (25 bp)
TGACAGTTTCCAGATGCCCAAAGCT
LOC_Os11g29000
OsAffx.31194.1.S1_at--892--1631Chr11:16280873..16280897 (25 bp)
AGCGTTTGCCAGCATTGCAGAGCAT
LOC_Os11g29000
OsAffx.31194.1.S1_at--218--8151Chr11:16280827..16280851 (25 bp)
GGAAAGGCTCCCAGATTGTCTTAGA
LOC_Os11g29000
OsAffx.31194.1.S1_at--283--7151NONE
GTCTTAGAGATCGTCCAGCAAAACT
NONE
OsAffx.31194.1.S1_at--1113--2411Chr11:16280791..16280815 (25 bp)
AAAACTACGTCATCTGCGGATCACT
LOC_Os11g29000
OsAffx.31194.1.S1_at--1007--4671Chr11:16280776..16280800 (25 bp)
GCGGATCACTTGCAACTTGGATCTT
LOC_Os11g29000
OsAffx.31194.1.S1_at--943--591Chr11:16280684..16280708 (25 bp)
ATGCCTGTACAGATGCGGAAGACGA
LOC_Os11g29000
OsAffx.31194.1.S1_at--857--2331Chr11:16280630..16280654 (25 bp)
AAAGAGATTCCGACAGCACTGAGAC
LOC_Os11g29000
OsAffx.31194.1.S1_at--217--8911Chr11:16280611..16280635 (25 bp)
TGAGACGAATATCGAGCCGAGCCCG
LOC_Os11g29000
OsAffx.31194.1.S1_at--400--5851Chr11:16280593..16280617 (25 bp)
GAGCCCGAGCACATCCCAAGTTGGA
LOC_Os11g29000
OsAffx.31194.1.S1_at--934--6611Chr11:16280528..16280598 (25 bp)
GTTGGAGGTCGTTTCTCTTATTTCT
LOC_Os11g29000
Target Sequence 
TGACAGTTTCCAGATGCCCAAAGCTGAATATTCTGCAGCGTTTGCCAGCATTGCAGAGCATGGAGTTGAATGACCAAGAG
ATGGAAAGGCTCCCAGATTGTCTTAGAGATCGTCCAGCAAAACTACGTCATCTGCGGATCACTTGCAACTTGGATCTTCT
CACCCTGATCTCCCGGGGGAAAGGCACCCCCGAGTGGGAGAAGATCAAACACATCCAGCAAGTGAATGCCTGTACAGATG
CGGAAGACGACAAGACCGACAAACGGTTTGTCTTCTACAAAAGAGATTCCGACAGCACTGAGACGAATATCGAGCCGAGC
CCGAGCACATCCCAAGTTGGAGGTCGTTTCTCTTATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis