Browse Element(s) Details


OsAffx.3120.1.S1_at

Description tigr:9631.m00211
TID=OsAffx.3120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0300011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02970Os.13488.1.S1_at5/113+1174351..1183184DEAD/DEAH box helicase carpel factory, putative, expressed
LOC_Os03g02980Os.18211.1.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g02980Os.18211.2.S1_x_at11/113+1190026..1196205Protein kinase domain containing protein, expressed
LOC_Os03g03000OsAffx.3120.1.S1_at11/113+1205217..1206205Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g03010OsAffx.12716.1.S1_at11/113+1208153..1208697expressed protein
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3120.1.S1_at--687--891Chr03:1205548..1205572 (25 bp)
AGGCCGAGAACCAGCGGATGACGCA
LOC_Os03g03000
OsAffx.3120.1.S1_at--978--9871Chr03:1205649..1205786 (25 bp)
TACATCCCTCGAGGTGACCAGGCGA
LOC_Os03g03000
OsAffx.3120.1.S1_at--319--9311Chr03:1205653..1205790 (25 bp)
TCCCTCGAGGTGACCAGGCGACGGT
LOC_Os03g03000
OsAffx.3120.1.S1_at--1073--1931Chr03:1205910..1205934 (25 bp)
ACGGCGTGTTCGTGTCCCCGCAGTA
LOC_Os03g03000
OsAffx.3120.1.S1_at--755--7451Chr03:1205921..1205945 (25 bp)
GTGTCCCCGCAGTACACGAGCTACT
LOC_Os03g03000
OsAffx.3120.1.S1_at--101--5031Chr03:1205929..1205953 (25 bp)
GCAGTACACGAGCTACTCCGAAGCG
LOC_Os03g03000
OsAffx.3120.1.S1_at--737--2171Chr03:1205934..1205958 (25 bp)
ACACGAGCTACTCCGAAGCGCGCGG
LOC_Os03g03000
OsAffx.3120.1.S1_at--181--7611Chr03:1205999..1206023 (25 bp)
GGGCACGTGCGGGTGCGCGTTGCCG
LOC_Os03g03000
OsAffx.3120.1.S1_at--199--9411Chr03:1206126..1206150 (25 bp)
TCGTCTACTGCTTCAACCTCAAGGT
LOC_Os03g03000
OsAffx.3120.1.S1_at--305--7831Chr03:1206148..1206172 (25 bp)
GGTCAAAACAACGACAACTCTTCAT
LOC_Os03g03000
OsAffx.3120.1.S1_at--906--3271Chr03:1206151..1206175 (25 bp)
CAAAACAACGACAACTCTTCATCAC
LOC_Os03g03000
Target Sequence 
AGGCCGAGAACCAGCGGATGACGCACATCGCCGTGGAGCGCAACCGCCGCCGCCTCATGAACGACCACCTCGCCTCCCTC
CGATCGCTCATCCCCTCCAACTACATCCCTCGAGGTGACCAGGCGACGGTGGTGGGCGGGGCGATCGACTACGTGAAGCA
GCTGGAGCAGCAGCTGGTGGCGCTGCAGGCGGCGGCGGCGGAGCGGAGCGGCGTCGGCGTGGTGGCGGCGGCGGCCACCG
CGGCGTCGGACGGCGTGTTCGTGTCCCCGCAGTACACGAGCTACTCCGAAGCGCGCGGCGGCAGCGGCGTCGACGTGGAG
GCGACGGCCGCGGTGGGGGGGCACGTGCGGGTGCGCGTTGCCGGCAGGCGGTGGACCGGGCGGCTCGTGCGCGCCGTCGC
CGCCATGGAGGACCTCCGCCTCACCGTGCTGCACCTCGCCGTCACCTCCGTCGGACATGACGCCGTCGTCTACTGCTTCA
ACCTCAAGGTCAAAACAACGACAACTCTTCATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis