Browse Element(s) Details


OsAffx.31202.1.S1_at

Description tigr:9639.m02669
TID=OsAffx.31202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2951011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29450OsAffx.20565.1.S1_at1/1111+16589821..16592736retrotransposon protein, putative, unclassified
LOC_Os11g29470Os.15237.1.S1_at1/1111+16595388..16597465expressed protein
LOC_Os11g29460OsAffx.31201.1.S1_at11/1111+16597398..16598142NA
LOC_Os11g29480OsAffx.7248.1.S1_at10/1111+16602640..16604041hypothetical protein
LOC_Os11g29490Os.52639.1.S1_at11/1111+16606016..16611363E1-E2 ATPase family protein, expressed
LOC_Os11g29500Os.53478.1.S1_at10/1111+16613305..16613976expressed protein
LOC_Os11g29510OsAffx.31202.1.S1_at11/1111+16615145..16618901Protein kinase domain containing protein
LOC_Os11g29520Os.54766.1.S1_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54766.1.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_s_at11/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520Os.54638.1.S1_at9/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29520OsAffx.14387.2.S1_at8/1111+16623902..16629488NB-ARC domain containing protein, expressed
LOC_Os11g29530OsAffx.29419.3.S1_at2/1111+16633186..16639146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g29540OsAffx.13772.1.S1_x_at1/1111+16640249..16641487hypothetical protein
LOC_Os11g29550OsAffx.19069.1.S1_at11/1111+16642440..16644195hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31202.1.S1_at--121--2271Chr11:16618019..16618043 (25 bp)
AAATCTTGTGGGTTTTGCTGACACA
LOC_Os11g29510
OsAffx.31202.1.S1_at--547--4871Chr11:16617829..16617853 (25 bp)
GCTATCTTGCTTGGAGTGGCATCTG
LOC_Os11g29510
OsAffx.31202.1.S1_at--945--7531Chr11:16617814..16617838 (25 bp)
GTGGCATCTGGACTGGAAGCTATTC
LOC_Os11g29510
OsAffx.31202.1.S1_at--924--10211Chr11:16617794..16617818 (25 bp)
TATTCATTCTGCAGGCTTTGTCCAT
LOC_Os11g29510
OsAffx.31202.1.S1_at--582--31Chr11:16616302..16616326 (25 bp)
ATTGGTGTCTTCTGTTTTGGAAATC
LOC_Os11g29510
OsAffx.31202.1.S1_at--963--1091Chr11:16616244..16616268 (25 bp)
AGTGGAGCCCCACGAAATGTCCCAG
LOC_Os11g29510
OsAffx.31202.1.S1_at--675--2971Chr11:16616229..16616253 (25 bp)
AATGTCCCAGGATACTTTTGGCAGA
LOC_Os11g29510
OsAffx.31202.1.S1_at--256--9811Chr11:16616192..16616216 (25 bp)
TAACAATCCAGATGATCGTCCCTCA
LOC_Os11g29510
OsAffx.31202.1.S1_at--679--7211Chr11:16616175..16616199 (25 bp)
GTCCCTCAATGGCTACTTTGGTTTC
LOC_Os11g29510
OsAffx.31202.1.S1_at--62--10671Chr11:16615260..16615284 (25 bp)
TTCCGTGTTCAGCTATGGTCAATTG
LOC_Os11g29510
OsAffx.31202.1.S1_at--218--7831Chr11:16615244..16615268 (25 bp)
GGTCAATTGGTTACTCAAGCTCGAA
LOC_Os11g29510
Target Sequence 
AAATCTTGTGGGTTTTGCTGACACAGAGGAGTACTATGCTCTAGTTTATGAAAGGGCTAAACAGGACCTCGAAGGATTCA
GAGCATCCAATAAAGGTGAGTTGGATGCTATCTTGCTTGGAGTGGCATCTGGACTGGAAGCTATTCATTCTGCAGGCTTT
GTCCATTGGGACATTCAGTTGAGGAATATTCTTTTGATGAAGGAAAGGGAGAGAGATGAGTTCTTCAAGGATAGAAGATT
TGGCATCTTTAATGCAAATGATAAAGAGAGTGCCCAGGAAAAAATTGGTGTCTTCTGTTTTGGAAATCTCATCAGAGAAC
TGGTTTTACTAGAAAGGAAAGAGTGGAGCCCCACGAAATGTCCCAGGATACTTTTGGCAGATACATGTATTGTTAACAAT
CCAGATGATCGTCCCTCAATGGCTACTTTGGTTTCAAAATTGAAGGTTCCGTGTTCAGCTATGGTCAATTGGTTACTCAA
GCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis