Browse Element(s) Details


OsAffx.31233.2.S1_at

Description tigr:9639.m02800
TID=OsAffx.31233.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3093011/11hypothetical protein
LOC_Os05g487101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30880NANA11+17467650..17468333retrotransposon protein, putative, unclassified
LOC_Os11g30890OsAffx.19093.1.S1_at10/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.10222.1.S1_x_at2/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.6693.1.S1_at1/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30899NANA11+17479922..17481225NA
LOC_Os11g30910Os.27466.1.S1_at11/1111+17482242..17483997Sulfotransferase domain containing protein, expressed
LOC_Os11g30920OsAffx.1319.1.S1_at1/1111+17488463..17491126transposon protein, putative, Mariner sub-class
LOC_Os11g30930OsAffx.31233.2.S1_at11/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.2.S1_s_at9/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.1.S1_at3/1111+17491528..17493962hypothetical protein
LOC_Os11g30940OsAffx.31234.1.S1_at10/1111+17495610..17497102hypothetical protein
LOC_Os11g30950OsAffx.31235.2.A1_at11/1111+17499333..17499821hypothetical protein
LOC_Os11g30960Os.46012.2.S1_x_at7/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.27088.1.A1_x_at5/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.46012.3.S1_x_at4/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30970OsAffx.26069.1.S1_x_at2/1111+17514635..17518000retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009409biological_processresponse to cold
GO:0005634cellular_componentnucleus
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31233.2.S1_at--52--9431Chr11:17493282..17493306 (25 bp)
TCGGTGTGATTCAGGATTGTAAGGA
LOC_Os11g30930
OsAffx.31233.2.S1_at--481--6311Chr11:17493040..17493064 (25 bp)
GATGAAGGCGGCGACTTGTACTTGA
LOC_Os11g30930
OsAffx.31233.2.S1_at--1159--8991Chr11:17493038..17493062 (25 bp)
TGAAGGCGGCGACTTGTACTTGATT
LOC_Os11g30930
OsAffx.31233.2.S1_at--552--891Chr11:17493035..17493059 (25 bp)
AGGCGGCGACTTGTACTTGATTGGT
LOC_Os11g30930
OsAffx.31233.2.S1_at--106--4711Chr11:17493033..17493057 (25 bp)
GCGGCGACTTGTACTTGATTGGTTC
LOC_Os11g30930
OsAffx.31233.2.S1_at--378--3931Chr11:17493032..17493056 (25 bp)
CGGCGACTTGTACTTGATTGGTTCG
LOC_Os11g30930
OsAffx.31233.2.S1_at--257--8832Chr05:27838988..27839056 (25 bp)
TGATTGGTTCGATGGGAGGTGACTT
LOC_Os05g48710
OsAffx.31233.2.S1_at--281--10631Chr11:17492967..17493035 (25 bp)
TTCGATGGGAGGTGACTTGTGGCAG
LOC_Os11g30930
OsAffx.31233.2.S1_at--754--6291Chr11:17491599..17491623 (25 bp)
GATGATCAGTTTGGTGCGTGGACCA
LOC_Os11g30930
OsAffx.31233.2.S1_at--593--6431Chr11:17491596..17491620 (25 bp)
GATCAGTTTGGTGCGTGGACCAAAT
LOC_Os11g30930
OsAffx.31233.2.S1_at--773--1191Chr11:17491592..17491616 (25 bp)
AGTTTGGTGCGTGGACCAAATTGGT
LOC_Os11g30930
Target Sequence 
TCGGTGTGATTCAGGATTGTAAGGAAGTGGAGGACAAGGGTGGTGAGATCTGTGATGGCAGCAGCATGGGGTACTCACAT
GATGGAGGGACACGAACTGCTGCCCTGAGGGGCGGATGGCGTATTCGAGGCAAGTGGTTTGAACGTAAATCCGGCTACTT
ATTGGAAGAAGGCAAAAATATGATCTTCGATAGCCAGGATGGGCCTGATTTGGATGAGTACGAGTTCTGGCCTGATTTGG
ATGATGAAGGCGGCGACTTGTACTTGATTGGTTCGATGGGAGGTGACTTGTGGCAGGGGACAATGGCCAACCAAGGTGGT
GGACCGAGCAAGCACATCATGGTGGAGTCCTCCAATATCAACGGGCAGAGCAAGGACGTGTCTAACCCATTGATGCCCAA
CAAGGAGGAGATACATGGCGAGGAGAAGATGCCCAACAACAAAGAAAATGGTGATGATCAGTTTGGTGCGTGGACCAAAT
TGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31233.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis