Browse Element(s) Details


OsAffx.31234.1.S1_at

Description tigr:9639.m02801
TID=OsAffx.31234.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3094010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30890OsAffx.19093.1.S1_at10/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.10222.1.S1_x_at2/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30890OsAffx.6693.1.S1_at1/1111+17470191..17473729Sulfotransferase domain containing protein
LOC_Os11g30899NANA11+17479922..17481225NA
LOC_Os11g30910Os.27466.1.S1_at11/1111+17482242..17483997Sulfotransferase domain containing protein, expressed
LOC_Os11g30920OsAffx.1319.1.S1_at1/1111+17488463..17491126transposon protein, putative, Mariner sub-class
LOC_Os11g30930OsAffx.31233.2.S1_at11/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.2.S1_s_at9/1111+17491528..17493962hypothetical protein
LOC_Os11g30930OsAffx.31233.1.S1_at3/1111+17491528..17493962hypothetical protein
LOC_Os11g30940OsAffx.31234.1.S1_at10/1111+17495610..17497102hypothetical protein
LOC_Os11g30950OsAffx.31235.2.A1_at11/1111+17499333..17499821hypothetical protein
LOC_Os11g30960Os.46012.2.S1_x_at7/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.27088.1.A1_x_at5/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30960Os.46012.3.S1_x_at4/1111+17508563..17513657retrotransposon protein, putative, unclassified
LOC_Os11g30970OsAffx.26069.1.S1_x_at2/1111+17514635..17518000retrotransposon protein, putative, unclassified
LOC_Os11g30980NANA11+17519627..17520073retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g30990NANA11+17520596..17525003retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31234.1.S1_at--1044--8891Chr11:17495675..17495699 (25 bp)
TGAGACACCACTTCAACTGCTTGAA
LOC_Os11g30940
OsAffx.31234.1.S1_at--634--5371Chr11:17495720..17495744 (25 bp)
GAAGAAGCCCTTTGGCATCCTTCAA
LOC_Os11g30940
OsAffx.31234.1.S1_at--254--7911Chr11:17495751..17495775 (25 bp)
GGTTCGCCCAAGGAGATAATGCCAG
LOC_Os11g30940
OsAffx.31234.1.S1_at--841--9971Chr11:17495847..17495871 (25 bp)
TACCTCATTGTGCATTGGTCACCAA
LOC_Os11g30940
OsAffx.31234.1.S1_at--655--6171Chr11:17495872..17495896 (25 bp)
GAGGATGGTTTCGACTGGCAACAAT
LOC_Os11g30940
OsAffx.31234.1.S1_at--858--8991Chr11:17495902..17495926 (25 bp)
TGAAGAGCTTGACCACACGCGGAAC
LOC_Os11g30940
OsAffx.31234.1.S1_at--214--8171Chr11:17495922..17495946 (25 bp)
GGAACACTGCTTCGCTCAAGCGATA
LOC_Os11g30940
OsAffx.31234.1.S1_at--838--3691NONE
CTATGTGCGTAGAACTCCAACCAAA
NONE
OsAffx.31234.1.S1_at--670--3231Chr11:17496922..17496946 (25 bp)
CAAGAAAAGCACTGGCACGCCTCAT
LOC_Os11g30940
OsAffx.31234.1.S1_at--917--4451Chr11:17496940..17496964 (25 bp)
GCCTCATCAGGCAACTTCATTCTTT
LOC_Os11g30940
OsAffx.31234.1.S1_at--1066--10373Chr11:17496988..17497012 (25 bp)
TTTTCTCAGGCATATCACTCAGGTC
LOC_Os11g30940
Target Sequence 
TGAGACACCACTTCAACTGCTTGAAGGAGTGGGAATCAAAGGCTTGAAGAAGCCCTTTGGCATCCTTCAACAAGAAGGTT
CGCCCAAGGAGATAATGCCAGGAAATTTAGTTCTCAAGAAGAAGGTGAACTCAGTGGCAGTGGGGAAGTTGGAGTTGAAG
TGGGAAGGCCCCTACCTCATTGTGCATTGGTCACCAAGAGGATGGTTTCGACTGGCAACAATGGGGGTGAAGAGCTTGAC
CACACGCGGAACACTGCTTCGCTCAAGCGATACTATGTGCGTAGAACTCCAACCAAACAAGAAAAGCACTGGCACGCCTC
ATCAGGCAACTTCATTCTTTGATTTTCTTCCACCCACCGCTTTTTTTCTCAGGCATATCACTCAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis