Browse Element(s) Details


OsAffx.31293.1.S1_at

Description tigr:9639.m03089
TID=OsAffx.31293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY142038 At4g37280C7A10_80
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g011302/11MRG family protein, expressed
LOC_Os11g343001/11MRG family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01080NANA4+53570..55208hypothetical protein
LOC_Os04g01089OsAffx.31844.1.S1_at4/114+57408..58289NA
LOC_Os04g01089OsAffx.2606.1.S1_at2/114+57408..58289NA
LOC_Os04g01089OsAffx.1436.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01089OsAffx.8939.1.S1_x_at1/114+57408..58289NA
LOC_Os04g01100NANA4+60275..61237hAT family dimerisation domain containing protein
LOC_Os04g01110NANA4+61795..63463BED zinc finger family protein
LOC_Os04g01120NANA4+64513..67460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01124OsAffx.25819.3.S1_at11/114+73522..74064hypothetical protein
LOC_Os04g01124OsAffx.25819.1.S1_at1/114+73522..74064hypothetical protein
LOC_Os04g01130Os.39952.1.S1_at11/114+79564..88464MRG family protein, expressed
LOC_Os04g01130Os.7943.3.S1_s_at8/114+79564..88464MRG family protein, expressed
LOC_Os04g01130OsAffx.31293.1.S1_at2/114+79564..88464MRG family protein, expressed
LOC_Os04g01140Os.8511.1.S1_s_at11/114+90337..92174Cytochrome P450 family protein, expressed
LOC_Os04g01150Os.8082.1.S1_at11/114+106160..110245phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g01160OsAffx.13605.1.S1_x_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g01160OsAffx.13605.1.S1_at11/114+112181..115463Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31293.1.S1_at--703--8612Chr04:88112..88287 (25 bp)
TGGTGGTTCTAAAGCAGAAGGTTTC
LOC_Os04g01130
OsAffx.31293.1.S1_at--621--6811Chr11:19596777..19596801 (25 bp)
GTTTCCTAAAATATGGTACACGTTG
NONE
OsAffx.31293.1.S1_at--912--10091Chr11:19596766..19596790 (25 bp)
TATGGTACACGTTGCATTAGAGGAT
NONE
OsAffx.31293.1.S1_at--214--9071Chr11:19596754..19596778 (25 bp)
TGCATTAGAGGATGTGTCCGGCCCT
NONE
OsAffx.31293.1.S1_at--914--3551Chr11:19596752..19596776 (25 bp)
CATTAGAGGATGTGTCCGGCCCTGC
NONE
OsAffx.31293.1.S1_at--1135--9111Chr11:19596730..19596754 (25 bp)
TGCGGTCATCCCACATTCGGTACGG
NONE
OsAffx.31293.1.S1_at--77--7131Chr11:19596726..19596750 (25 bp)
GTCATCCCACATTCGGTACGGTGGT
NONE
OsAffx.31293.1.S1_at--791--2071Chr11:19596718..19596742 (25 bp)
ACATTCGGTACGGTGGTTATCACGA
NONE
OsAffx.31293.1.S1_at--245--7731Chr11:19596707..19596731 (25 bp)
GGTGGTTATCACGAACCACGTGAAT
NONE
OsAffx.31293.1.S1_at--178--5431Chr11:19596695..19596719 (25 bp)
GAACCACGTGAATTTCATATCCAAA
NONE
OsAffx.31293.1.S1_at--1153--9772Chr04:88434..88453 (20 bp)
TAAGGTCGTGGTTACTGTGCAGTTA
LOC_Os04g01130
Target Sequence 
TGGTGGTTCTAAAGCAGAAGGTTTCCTAAAATATGGTACACGTTGCATTAGAGGATGTGTCCGGCCCTGCGGTCATCCCA
CATTCGGTACGGTGGTTATCACGAACCACGTGAATTTCATATCCAAAAAGTTGAATTCGAAATTTTCAAATCTTAAAGGT
AAGGTCGTGGTTACTGTGCAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis