Browse Element(s) Details


OsAffx.31338.3.S1_at

Description tigr:9639.m03341
TID=OsAffx.31338.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3696011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36920NANA11+21278734..21280743hypothetical protein
LOC_Os11g36930OsAffx.7318.1.S1_at11/1111+21282341..21287544hypothetical protein
LOC_Os11g36940OsAffx.31336.1.S1_x_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36940OsAffx.31336.1.S1_at11/1111+21288784..21290262Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os11g36950OsAffx.31337.1.S1_at10/1111+21295469..21297132T-complex protein 1, theta subunit, putative
LOC_Os11g36960OsAffx.31338.3.S1_at11/1111+21304782..21307940DnaJ domain containing protein, expressed
LOC_Os11g36970OsAffx.31338.2.S1_at10/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.31338.1.S1_at9/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.29218.1.S1_s_at8/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36970OsAffx.2057.3.S1_at1/1111+21315132..21322141Zinc finger, C3HC4 type family protein
LOC_Os11g36980OsAffx.19206.1.S1_x_at10/1111+21323412..21324285hypothetical protein
LOC_Os11g36980Os.27542.1.A1_at2/1111+21323412..21324285hypothetical protein
LOC_Os11g36990NANA11+21326069..21329390transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31338.3.S1_at--796--1131Chr11:21307391..21307415 (25 bp)
AGTCGAGCTACAACCATTCAGAGTA
LOC_Os11g36960
OsAffx.31338.3.S1_at--665--8291Chr11:21307426..21307450 (25 bp)
GGCTTGAAGCTTGTCCTGAACAGGA
LOC_Os11g36960
OsAffx.31338.3.S1_at--579--8131Chr11:21307475..21307499 (25 bp)
GGACATACCAGTCTGCTGTGGCAAA
LOC_Os11g36960
OsAffx.31338.3.S1_at--793--10311Chr11:21307544..21307568 (25 bp)
TTTCTCTCATTTAGTGCACACGGGA
LOC_Os11g36960
OsAffx.31338.3.S1_at--1048--2131Chr11:21307568..21307592 (25 bp)
ACAGAGGGACTCAACATGGCAGATT
LOC_Os11g36960
OsAffx.31338.3.S1_at--296--8271Chr11:21307585..21307609 (25 bp)
GGCAGATTGACATTCTTCCACAAGT
LOC_Os11g36960
OsAffx.31338.3.S1_at--118--8131Chr11:21307651..21307675 (25 bp)
GGACTCCTTCCAGCATAGATATGTG
LOC_Os11g36960
OsAffx.31338.3.S1_at--853--4431Chr11:21307683..21307707 (25 bp)
GCCATCGGCGAGATCATTGAGTGCA
LOC_Os11g36960
OsAffx.31338.3.S1_at--1--271Chr11:21307719..21307743 (25 bp)
ATAAAAGTTTCTCTGCTGACCCAAG
LOC_Os11g36960
OsAffx.31338.3.S1_at--376--5891Chr11:21307756..21307780 (25 bp)
GAGCGGTGTTTAAGCCTGACAGGCA
LOC_Os11g36960
OsAffx.31338.3.S1_at--1002--3091Chr11:21307832..21307856 (25 bp)
AATACCATCCTTCCGTCTGACAGAA
LOC_Os11g36960
Target Sequence 
AGTCGAGCTACAACCATTCAGAGTACATTTGATCTGGCTTGAAGCTTGTCCTGAACAGGAGCAGGAGAAACAGTGGTTGG
ATCAGGACATACCAGTCTGCTGTGGCAAATTTAAAATTCGGACCTGGAAAGCCCAATATGAGACAACTGATACTTTCTCT
CATTTAGTGCACACGGGACAGAGGGACTCAACATGGCAGATTGACATTCTTCCACAAGTAGGCGAAATTTGGTGTATCTA
CATGAACTGGACATCTGACTGGACTCCTTCCAGCATAGATATGTGCGAGTTCGCCATCGGCGAGATCATTGAGTGCACGG
AAGCACTTATAAAAGTTTCTCTGCTGACCCAAGTTAATGGCTACAGAGCGGTGTTTAAGCCTGACAGGCAAAGTGGAGTT
CTGGAGATACCTAAAAGAGATCGTTTGAAGTTTTCTCATCAAATACCATCCTTCCGTCTGACAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31338.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis