Browse Element(s) Details


OsAffx.31360.1.S1_at

Description tigr:9639.m03465
TID=OsAffx.31360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3819011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38150OsAffx.19227.1.S1_at11/1111+22117879..22122784hypothetical protein
LOC_Os11g38160OsAffx.14584.1.S1_at11/1111+22124289..22125964Sugar transporter family protein, expressed
LOC_Os11g38170Os.26840.1.S1_at11/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.2.S1_x_at2/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38170Os.23259.1.S1_a_at1/1111+22129652..22136454Notchless homolog 1, putative, expressed
LOC_Os11g38180Os.57086.1.S1_at11/1111+22138020..22139689F-box domain containing protein, expressed
LOC_Os11g38190OsAffx.31360.1.S1_at11/1111+22141243..22142659hypothetical protein
LOC_Os11g38200OsAffx.31361.1.S1_at11/1111+22144469..22145890F-box domain containing protein
LOC_Os11g38210OsAffx.7335.1.S1_at11/1111+22148474..22148902expressed protein
LOC_Os11g38210Os.23172.1.S1_x_at1/1111+22148474..22148902expressed protein
LOC_Os11g38220OsAffx.19229.1.S1_s_at1/1111+22150250..22150678expressed protein
LOC_Os11g38220OsAffx.7335.1.S1_at1/1111+22150250..22150678expressed protein
LOC_Os11g38230OsAffx.19228.1.S1_at11/1111+22152816..22154225F-box domain containing protein
LOC_Os11g38240OsAffx.19229.1.S1_s_at11/1111+22155870..22156521expressed protein
LOC_Os11g38250Os.54000.1.S1_at11/1111+22157130..22158828expressed protein
LOC_Os11g38260Os.27862.1.S1_at10/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38260Os.12799.1.S1_s_at2/1111+22159158..22161018harpin binding protein 1, putative, expressed
LOC_Os11g38270OsAffx.31362.1.S1_at11/1111+22162134..22163672hypothetical protein
LOC_Os11g38280NANA11+22164708..22164968hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31360.1.S1_at--940--5631Chr11:22141743..22141767 (25 bp)
GACACCCGCAATGGAGATCTCTTTG
LOC_Os11g38190
OsAffx.31360.1.S1_at--91--2111Chr11:22141702..22141726 (25 bp)
ACATGATCACGTCTTTCCGGTGGTA
LOC_Os11g38190
OsAffx.31360.1.S1_at--671--9411Chr11:22141673..22141697 (25 bp)
TCGTCGAGCGCTGTCTGATTGAGAA
LOC_Os11g38190
OsAffx.31360.1.S1_at--962--4771Chr11:22141648..22141672 (25 bp)
GCTGCCCTCAGCTGAAGATGGTGAC
LOC_Os11g38190
OsAffx.31360.1.S1_at--890--8611Chr11:22141630..22141654 (25 bp)
TGGTGACCGGCAAACTTACAATCTT
LOC_Os11g38190
OsAffx.31360.1.S1_at--668--3051Chr11:22141611..22141635 (25 bp)
AATCTTGTGCAGTCTCTTGGGAAGC
LOC_Os11g38190
OsAffx.31360.1.S1_at--371--8191Chr11:22141592..22141616 (25 bp)
GGAAGCTGTTGCTACTTGTCAGATA
LOC_Os11g38190
OsAffx.31360.1.S1_at--620--5911Chr11:22141519..22141543 (25 bp)
GAGCTTCAACTCAAACCCTTGGAAA
LOC_Os11g38190
OsAffx.31360.1.S1_at--855--1571Chr11:22141452..22141476 (25 bp)
AGCTCATCCTGCAACAAGTCCTTTG
LOC_Os11g38190
OsAffx.31360.1.S1_at--619--10271Chr11:22141431..22141455 (25 bp)
TTTGCCGCCTCTCAGTATGAGGAGA
LOC_Os11g38190
OsAffx.31360.1.S1_at--491--10211Chr11:22141389..22141413 (25 bp)
TATTTTCTTGATAGCCTCTGCCCTA
LOC_Os11g38190
Target Sequence 
GACACCCGCAATGGAGATCTCTTTGCCTTTGAGCTTGAGGCACATGATCACGTCTTTCCGGTGGTATCTCTCGTCGAGCG
CTGTCTGATTGAGAAGCTGCCCTCAGCTGAAGATGGTGACCGGCAAACTTACAATCTTGTGCAGTCTCTTGGGAAGCTGT
TGCTACTTGTCAGATACTTCAGAGAGAGCTGGGACCAATTTGTTGGAGTCAGAGTATTCGAATTGAGCTTCAACTCAAAC
CCTTGGAAATGGATAGAAAAGAAGAGCTTGGATGGCGAGAGCATTTTCATCAGCTCATCCTGCAACAAGTCCTTTGCCGC
CTCTCAGTATGAGGAGATTGAAGATGACCGCATCTATTTTCTTGATAGCCTCTGCCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis