Browse Element(s) Details


OsAffx.31435.1.S1_at

Description tigr:9639.m03870
TID=OsAffx.31435.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4206011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42040Os.26992.1.S1_at11/1111+24787775..24792597NB-ARC domain containing protein, expressed
LOC_Os11g42050OsAffx.31434.2.S1_x_at11/1111+24794968..24795466hypothetical protein
LOC_Os11g42050OsAffx.31434.1.S1_at9/1111+24794968..24795466hypothetical protein
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.2.S1_x_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.1.S1_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42080Os.54118.1.A1_at2/1111+24832078..24834273expressed protein
LOC_Os11g42090Os.57560.1.S1_at11/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42090OsAffx.1238.1.S1_at1/1111+24837528..24843993Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31435.1.S1_at--789--5531Chr11:24815308..24815332 (25 bp)
GAAACACCTGCAATCTGGGCGAGTT
LOC_Os11g42060
OsAffx.31435.1.S1_at--329--4931Chr11:24815278..24815302 (25 bp)
GCTTGAGCAACCTTCGCAAACTTAG
LOC_Os11g42060
OsAffx.31435.1.S1_at--10--2871Chr11:24815209..24815233 (25 bp)
AAGTGCTTGCCAATTTTGCCAGTCT
LOC_Os11g42060
OsAffx.31435.1.S1_at--434--10691Chr11:24815194..24815218 (25 bp)
TTGCCAGTCTCGCATCACTGAAGAT
LOC_Os11g42060
OsAffx.31435.1.S1_at--312--471Chr11:24815154..24815178 (25 bp)
ATCTCCACGAGATGCTGCCGACGAA
LOC_Os11g42060
OsAffx.31435.1.S1_at--671--8791Chr11:24815106..24815130 (25 bp)
TGTTCTTCCCTCTAATCTTTCAAAG
LOC_Os11g42060
OsAffx.31435.1.S1_at--679--9891Chr11:24815072..24815096 (25 bp)
TACTGCTTCCCGTCGAGACAATTTG
LOC_Os11g42060
OsAffx.31435.1.S1_at--950--1031Chr11:24814957..24814981 (25 bp)
AGGTGCTGCGCTTGAGATGCCTCAA
LOC_Os11g42060
OsAffx.31435.1.S1_at--46--8051Chr11:24814884..24814908 (25 bp)
GGAGTTTGTCGAAGCTCAGCACTGC
LOC_Os11g42060
OsAffx.31435.1.S1_at--467--9771Chr11:24814797..24814821 (25 bp)
TAATGCTGCTTCTGCACAGTCTGAA
LOC_Os11g42060
OsAffx.31435.1.S1_at--386--7171Chr11:24814779..24814803 (25 bp)
GTCTGAAGAACCAACTGCGCCTGAT
LOC_Os11g42060
Target Sequence 
GAAACACCTGCAATCTGGGCGAGTTGGTAAGCTTGAGCAACCTTCGCAAACTTAGCATCAGTGTTAGCAAGAAACTGAAG
CGTGCAGAAGATGAGCTGAAAGTGCTTGCCAATTTTGCCAGTCTCGCATCACTGAAGATTACATGGGGAATGGTATCTCC
ACGAGATGCTGCCGACGAATCAGATGCTGCAAAATTTAACCTTGTTCTTCCCTCTAATCTTTCAAAGCTGGATCTCTACT
GCTTCCCGTCGAGACAATTTGGGACGATTAGTTCTGACAGTTTAAAGAAACTGTATTTTACTGGTGGGAAGTTGCATAGT
CTGGAAATTCAGAATGGGGAGTGCAAAGTAGAGGTGCTGCGCTTGAGATGCCTCAAGGATCTGCAGTTTTGTTGGGAGGA
ATTGCGTGAACTGTATCCAATGCTGGAGTTTGTCGAAGCTCAGCACTGCTCAGGAGTAGCTAATTGGCCGCTAGACAACA
ATAAAGTATGGACGAAGGATGCTGAAACCAGTAATGCTGCTTCTGCACAGTCTGAAGAACCAACTGCGCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis