Browse Element(s) Details


OsAffx.31438.1.S1_at

Description tigr:9639.m03897
TID=OsAffx.31438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4231011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42250Os.17297.1.S1_at1/1111+24950559..24954980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42260Os.45173.1.S1_x_at1/1111+24955248..24957188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42270Os.54888.1.S1_at11/1111+24959891..24961625F-box domain containing protein, expressed
LOC_Os11g42280OsAffx.19329.1.S1_at11/1111+24963101..24964311F-box domain containing protein
LOC_Os11g42290Os.51179.1.S1_at3/1111+24965396..24966733Transferase family protein, expressed
LOC_Os11g42300OsAffx.7384.1.S1_at11/1111+24972795..24974276F-box domain containing protein, expressed
LOC_Os11g42310OsAffx.31438.1.S1_at11/1111+24975674..24977449F-box domain containing protein
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42340NANA11+24989842..24990264hypothetical protein
LOC_Os11g42350Os.11583.1.S1_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42350Os.38748.1.S1_s_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42360OsAffx.31248.1.S1_x_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.1.S1_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.2.S1_x_at2/1111+24996486..24997173hypothetical protein
LOC_Os11g42370Os.51179.1.S1_at11/1111+25000231..25001814Transferase family protein, expressed
LOC_Os11g42380OsAffx.19330.1.S1_at11/1111+25002100..25002673hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31438.1.S1_at--697--1531Chr11:24976227..24976251 (25 bp)
AGCTCACCGGCCTGAGGCGGTTCCT
LOC_Os11g42310
OsAffx.31438.1.S1_at--891--8871Chr11:24976215..24976239 (25 bp)
TGAGGCGGTTCCTGCAGCTGTTCGC
LOC_Os11g42310
OsAffx.31438.1.S1_at--355--7891Chr11:24976209..24976233 (25 bp)
GGTTCCTGCAGCTGTTCGCCGACGA
LOC_Os11g42310
OsAffx.31438.1.S1_at--437--3891Chr11:24976006..24976030 (25 bp)
CTGGAGGCCCTGTCGCTGGTGTTCC
LOC_Os11g42310
OsAffx.31438.1.S1_at--245--8391Chr11:24975961..24975985 (25 bp)
GGCGACTCGTACTCGCAGAATGAGC
LOC_Os11g42310
OsAffx.31438.1.S1_at--12--4031Chr11:24975954..24975978 (25 bp)
CGTACTCGCAGAATGAGCTCCGCGA
LOC_Os11g42310
OsAffx.31438.1.S1_at--696--811Chr11:24975874..24975898 (25 bp)
ATGGTGGTGCCTTGCCTGAGGAGCA
LOC_Os11g42310
OsAffx.31438.1.S1_at--274--4712Chr11:24975797..24975821 (25 bp)
GCTGGCCAAGTTCTTGCTCTGCAAC
LOC_Os11g42310
OsAffx.31438.1.S1_at--1072--4491Chr11:24975760..24975784 (25 bp)
GCCGAGCTGTTCTGCGTGTCCGCCG
LOC_Os11g42310
OsAffx.31438.1.S1_at--1091--7551Chr11:24975733..24975757 (25 bp)
GGGCCATTGTTCATGCTGGAACAGC
LOC_Os11g42310
OsAffx.31438.1.S1_at--317--6751Chr11:24975725..24975749 (25 bp)
GTTCATGCTGGAACAGCTGAAGCAA
LOC_Os11g42310
Target Sequence 
AGCTCACCGGCCTGAGGCGGTTCCTGCAGCTGTTCGCCGACGACGCCACGCACCTCCACCTCCAATCCGCCCGCCTCGGC
GCCGGCGCCGACAAGGACGCGCTGGCCAGCTTCCCCACCTTCCCCAACCTCCGCCACCTCGAGCTCTGGGGAAGCCTTCC
CGACGACGACGCCGCCGCCGCGGTGACCACGGTCACCACGATCCTCAACAGCACGCCGGGGCTGGAGGCCCTGTCGCTGG
TGTTCCACCCGCACGGCAACGGCGACGGCGACTCGTACTCGCAGAATGAGCTCCGCGACGCGCACCAGCTCAGGTACAAC
CCGCACGCCGTGCTCGCCGCGGCGGCGGGCGCCATGGTGGTGCCTTGCCTGAGGAGCACGGTGAGGGAGATCAACCTGGT
GCACTACCAGGGCGGCATGGCGCAGCGGTCGCTGGCCAAGTTCTTGCTCTGCAACGCGCCGGCGATCGCCGAGCTGTTCT
GCGTGTCCGCCGAGGGGCCATTGTTCATGCTGGAACAGCTGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis