Browse Element(s) Details


OsAffx.31447.1.S1_at

Description tigr:9639.m03953
TID=OsAffx.31447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4284010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42800Os.53158.1.S1_at11/1111+25274455..25277165Kinesin motor domain containing protein, expressed
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein
LOC_Os11g42820NANA11+25291315..25291840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42830NANA11+25293541..25295784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31447.1.S1_at--1008--1051Chr11:25302041..25302065 (25 bp)
AGGTGGCGGTGGTCCAGATCTAATC
LOC_Os11g42840
OsAffx.31447.1.S1_at--391--9731Chr11:25302061..25302082 (22 bp)
TAATCGGTGGGTGCCAGCCTCGTGA
LOC_Os11g42840
OsAffx.31447.1.S1_at--71--1691NONE
AGCCTCGTGACGCTCTTGCCAAGGC
NONE
OsAffx.31447.1.S1_at--706--4411Chr11:25302903..25302927 (25 bp)
GCCACCATCACCACTGTGATTGAAG
LOC_Os11g42840
OsAffx.31447.1.S1_at--536--7411Chr11:25302918..25302942 (25 bp)
GTGATTGAAGACAACATCGCCACTT
LOC_Os11g42840
OsAffx.31447.1.S1_at--1006--9251Chr11:25302942..25302966 (25 bp)
TCCTCCAAGGCCGATGACGGGAAGA
LOC_Os11g42840
OsAffx.31447.1.S1_at--208--8071Chr11:25302968..25302992 (25 bp)
GGAGAAGCACACTGGCGCCACCTCG
LOC_Os11g42840
OsAffx.31447.1.S1_at--706--7271Chr11:25302992..25303016 (25 bp)
GTCCACGGTGTCTGCCAAGGTTGAA
LOC_Os11g42840
OsAffx.31447.1.S1_at--620--6491Chr11:25303017..25303041 (25 bp)
GATAGCATTACCGTATCCGGCAAGG
LOC_Os11g42840
OsAffx.31447.1.S1_at--831--5711Chr11:25303047..25303071 (25 bp)
GACTCGCCATATCAGAACGCCGTAT
LOC_Os11g42840
OsAffx.31447.1.S1_at--1025--4491Chr11:25303065..25303089 (25 bp)
GCCGTATTCGGCAAGGTTGATGATC
LOC_Os11g42840
Target Sequence 
AGGTGGCGGTGGTCCAGATCTAATCGGTGGGTGCCAGCCTCGTGACGCTCTTGCCAAGGCTGCCACCATCACCACTGTGA
TTGAAGACAACATCGCCACTTCCTCCAAGGCCGATGACGGGAAGACGGAGAAGCACACTGGCGCCACCTCGTCCACGGTG
TCTGCCAAGGTTGAAGATAGCATTACCGTATCCGGCAAGGTCAGCGACTCGCCATATCAGAACGCCGTATTCGGCAAGGT
TGATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis