Browse Element(s) Details


OsAffx.31467.4.S1_at

Description tigr:9639.m04103
TID=OsAffx.31467.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to serinethreonine protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4426011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44230OsAffx.19364.1.S1_at11/1111+26217111..26219293hypothetical protein
LOC_Os11g44240Os.35344.3.S1_x_at8/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240Os.35344.18.S1_x_at5/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_at4/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_x_at3/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44250OsAffx.31467.2.S1_at11/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44250Os.56139.1.S1_at2/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.4.S1_at11/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.3.S1_s_at1/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44270OsAffx.31468.1.S1_at11/1111+26252601..26253000hypothetical protein
LOC_Os11g44280OsAffx.19365.1.S1_at11/1111+26255128..26255409hypothetical protein
LOC_Os11g44290NANA11+26260444..26260713expressed protein
LOC_Os11g44300OsAffx.7406.1.S1_at10/1111+26267439..26268268hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31467.4.S1_at--69--4131Chr11:26244995..26245019 (25 bp)
CGCTTGACGGACTTTGGGTATGCGT
LOC_Os11g44260
OsAffx.31467.4.S1_at--363--3691Chr11:26245006..26245030 (25 bp)
CTTTGGGTATGCGTTCACCTGGGAA
LOC_Os11g44260
OsAffx.31467.4.S1_at--295--5291Chr11:26245028..26245052 (25 bp)
GAAGGCCCAGGCACTGATATTAATG
LOC_Os11g44260
OsAffx.31467.4.S1_at--1004--10491Chr11:26245047..26245071 (25 bp)
TTAATGTTCTTTGTGGTACCATGGG
LOC_Os11g44260
OsAffx.31467.4.S1_at--538--6971Chr11:26245062..26245086 (25 bp)
GTACCATGGGATACATGGCCCCGGA
LOC_Os11g44260
OsAffx.31467.4.S1_at--739--8391Chr11:26245078..26245102 (25 bp)
GGCCCCGGAGTACCTTATGACATGG
LOC_Os11g44260
OsAffx.31467.4.S1_at--491--8951Chr11:26245095..26245119 (25 bp)
TGACATGGGCTCTGAACCCGACAAT
LOC_Os11g44260
OsAffx.31467.4.S1_at--754--1791Chr11:26245110..26245134 (25 bp)
ACCCGACAATCGACATCTACAGTTT
LOC_Os11g44260
OsAffx.31467.4.S1_at--120--1931Chr11:26245317..26245341 (25 bp)
ACGGGTGGTCTAGTGGTCACAGCTT
LOC_Os11g44260
OsAffx.31467.4.S1_at--27--7511Chr11:26245329..26245353 (25 bp)
GTGGTCACAGCTTGGCGTCTTTAAC
LOC_Os11g44260
OsAffx.31467.4.S1_at--513--4011Chr11:26245344..26245368 (25 bp)
CGTCTTTAACGCCACTGATTGAGGC
LOC_Os11g44260
Target Sequence 
CGCTTGACGGACTTTGGGTATGCGTTCACCTGGGAAGGCCCAGGCACTGATATTAATGTTCTTTGTGGTACCATGGGATA
CATGGCCCCGGAGTACCTTATGACATGGGCTCTGAACCCGACAATCGACATCTACAGTTTCGGTGTTGTGATGCTGGAGG
TATTGACGGGGAAGAAACCATATCTCTTTAAAGAAGAATGGAAGGAGGAGAAGAGAGAAAAATGTGAGCAAGATGGAAAG
AACACAGAAGAGGACAAGGAGGAGAGTGAACGAGAAGAAGAGGAGAAGACAACAGAAGAACAACATGAGTGGCAAAAGCG
GGACGGGTGGTCTAGTGGTCACAGCTTGGCGTCTTTAACGCCACTGATTGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31467.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis