Browse Element(s) Details


OsAffx.31468.1.S1_at

Description tigr:9639.m04104
TID=OsAffx.31468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4427011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44240Os.35344.3.S1_x_at8/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240Os.35344.18.S1_x_at5/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_at4/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_x_at3/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44250OsAffx.31467.2.S1_at11/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44250Os.56139.1.S1_at2/1111+26235217..26236986Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.4.S1_at11/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44260OsAffx.31467.3.S1_s_at1/1111+26244095..26245558Protein kinase domain containing protein
LOC_Os11g44270OsAffx.31468.1.S1_at11/1111+26252601..26253000hypothetical protein
LOC_Os11g44280OsAffx.19365.1.S1_at11/1111+26255128..26255409hypothetical protein
LOC_Os11g44290NANA11+26260444..26260713expressed protein
LOC_Os11g44300OsAffx.7406.1.S1_at10/1111+26267439..26268268hypothetical protein
LOC_Os11g44310OsAffx.31470.1.S1_at11/1111+26272600..26277666expressed protein
LOC_Os11g44320NANA11+26277981..26278366hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31468.1.S1_at--955--1951Chr11:26252631..26252654 (24 bp)
ACTGGGACCAGAATGACTTGCAAGA
LOC_Os11g44270
OsAffx.31468.1.S1_at--45--691Chr11:26252643..26252725 (25 bp)
ATGACTTGCAAGATTGTCCCTGCCA
LOC_Os11g44270
OsAffx.31468.1.S1_at--987--31Chr11:26252713..26252737 (25 bp)
ATTGTCCCTGCCACTGTGTCGAACA
LOC_Os11g44270
OsAffx.31468.1.S1_at--142--2471Chr11:26252734..26252758 (25 bp)
AACACCTTCGGTGCAAGTTGGTGCG
LOC_Os11g44270
OsAffx.31468.1.S1_at--192--5031Chr11:26252768..26252792 (25 bp)
GCAGTAGAACCCGATGGGCCGGCAC
LOC_Os11g44270
OsAffx.31468.1.S1_at--1048--4151Chr11:26252810..26252834 (25 bp)
CGCCGCCTCCTAACTTGGAAGAGAA
LOC_Os11g44270
OsAffx.31468.1.S1_at--846--1431Chr11:26252831..26252855 (25 bp)
AGAACCTTGGTGTTGATCATGACGA
LOC_Os11g44270
OsAffx.31468.1.S1_at--1047--10771Chr11:26252843..26252867 (25 bp)
TTGATCATGACGATGACACGCCCCT
LOC_Os11g44270
OsAffx.31468.1.S1_at--1134--291Chr11:26252885..26252909 (25 bp)
ATAGCCTACTCGGTGAGGCAGCGGC
LOC_Os11g44270
OsAffx.31468.1.S1_at--543--7891Chr11:26252915..26252939 (25 bp)
GGTTCGCGATCCGTGAGCTCGAGAT
LOC_Os11g44270
OsAffx.31468.1.S1_at--1069--6171Chr11:26252944..26252968 (25 bp)
GAGGAGCTTCTCCTCAGTACACCGA
LOC_Os11g44270
Target Sequence 
ACTGGGACCAGAATGACTTGCAAGATTGTCCCTGCCACTGTGTCGAACACCTTCGGTGCAAGTTGGTGCGGAGCCGGAGG
CAGTAGAACCCGATGGGCCGGCACGGACGCGAGATTCGCCTCGCCGCCTCCTAACTTGGAAGAGAACCTTGGTGTTGATC
ATGACGATGACACGCCCCTCCGTTTCCACACCGTCGATAGCCTACTCGGTGAGGCAGCGGCTCCGGGGTTCGCGATCCGT
GAGCTCGAGATCACCGAGGAGCTTCTCCTCAGTACACCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis