Browse Element(s) Details


OsAffx.31489.1.S1_at

Description tigr:9639.m04220
TID=OsAffx.31489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4538010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45330OsAffx.19389.1.S1_at11/1111+26920969..26923753NB-ARC domain containing protein, expressed
LOC_Os11g45339NANA11+26925390..26925831NA
LOC_Os11g45350OsAffx.31487.2.S1_at11/1111+26928363..26930224hypothetical protein
LOC_Os11g45350OsAffx.31487.1.S1_at4/1111+26928363..26930224hypothetical protein
LOC_Os11g45360OsAffx.31488.1.S1_at10/1111+26930803..26931275hypothetical protein
LOC_Os11g45370NANA11+26935213..26935626hypothetical protein
LOC_Os11g45380OsAffx.31489.1.S1_at10/1111+26943016..26945985hypothetical protein
LOC_Os11g45380OsAffx.21975.1.S1_x_at1/1111+26943016..26945985hypothetical protein
LOC_Os11g45390OsAffx.31490.1.S1_at11/1111+26960793..26968059von Willebrand factor type A domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31489.1.S1_at--756--8051Chr11:26944888..26944912 (25 bp)
GGAGAAGCTTCCCAAGCATCACGTC
LOC_Os11g45380
OsAffx.31489.1.S1_at--639--3551Chr11:26944872..26944896 (25 bp)
CATCACGTCGAGGATATGCGCAGGA
LOC_Os11g45380
OsAffx.31489.1.S1_at--897--251Chr11:26944859..26944883 (25 bp)
ATATGCGCAGGAGCCTGACCAAGGA
LOC_Os11g45380
OsAffx.31489.1.S1_at--814--8751Chr11:26944817..26944841 (25 bp)
TGTACCTCTACTCGTGGCTGGCGAG
LOC_Os11g45380
OsAffx.31489.1.S1_at--44--4691Chr11:26944739..26944763 (25 bp)
GCGGATGGTTCCACCAGCAGTACAT
LOC_Os11g45380
OsAffx.31489.1.S1_at--499--5031Chr11:26944723..26944747 (25 bp)
GCAGTACATGAAGCAGGTGGCCGTC
LOC_Os11g45380
OsAffx.31489.1.S1_at--188--9431Chr11:26944619..26944643 (25 bp)
TCGTGGGCCTTCAGGACAGGATCGA
LOC_Os11g45380
OsAffx.31489.1.S1_at--839--4091NONE
CGACATGTACCTGGCCGTCGTGCAT
NONE
OsAffx.31489.1.S1_at--717--7191Chr11:26943132..26943156 (25 bp)
GTCGTGCATGCGAGCAACCTGAGGC
LOC_Os11g45380
OsAffx.31489.1.S1_at--513--2611Chr11:26943117..26943141 (25 bp)
AACCTGAGGCGATGCTACTCCGGCG
LOC_Os11g45380
OsAffx.31489.1.S1_at--736--7191Chr11:26943061..26943085 (25 bp)
GTCGGAGCTGCCTGCACATGATGAT
LOC_Os11g45380
Target Sequence 
GGAGAAGCTTCCCAAGCATCACGTCGAGGATATGCGCAGGAGCCTGACCAAGGAGGAGCACGACGGCGTGCTGTACCTCT
ACTCGTGGCTGGCGAGCCACCAGACGCAGCAGGCCACCACCATGGCGTCGTCGCCGCCGGCCGGCGTCAGCGGATGGTTC
CACCAGCAGTACATGAAGCAGGTGGCCGTCGACGCGGAGTTCGACGCGTGCGGCATCCAGCCCGGGGTAGAGACGACCGA
GATCGACGCGACGGCGGACTGCGGCTGCGTCGTGGGCCTTCAGGACAGGATCGACCGCCGGCTGGAGCTCTGGTCCAACC
TCAAGCGCGAGGCGCCGCTCATGTTCCAGCCGTCCGAGGACGCCGAGTCGCACCACCTCACCGCCGTTTTCCGCGAGGCG
TCGCTCGATGCCATCAACCGTGCCATGCACCACGACATGTACCTGGCCGTCGTGCATGCGAGCAACCTGAGGCGATGCTA
CTCCGGCGCCGGGAAGCAGCAGCTGCATGGATACGGCTCGTCGGAGCTGCCTGCACATGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis