Browse Element(s) Details


OsAffx.31525.1.S1_at

Description tigr:9639.m04394
TID=OsAffx.31525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4727811/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47220NANA11+27844961..27846727retrotransposon protein, putative, LINE subclass
LOC_Os11g47229OsAffx.31526.1.S1_at11/1111+27847465..27848013hypothetical protein
LOC_Os11g47240OsAffx.19418.1.S1_at7/1111+27849300..27852726Leucine Rich Repeat family protein
LOC_Os11g47250Os.40855.2.S1_x_at10/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.5.S1_x_at6/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.4.S1_x_at4/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40360.1.S1_x_at1/1111+27854032..27859560hypothetical protein
LOC_Os11g47250Os.40855.4.S1_at1/1111+27854032..27859560hypothetical protein
LOC_Os11g47260Os.46012.2.S1_x_at11/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.46012.3.S1_x_at9/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.27088.1.A1_x_at5/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47260Os.54691.1.S1_x_at1/1111+27863257..27865566retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g47269NANA11+27870072..27870466NA
LOC_Os11g47278OsAffx.31525.1.S1_at11/1111+27871699..27872374hypothetical protein
LOC_Os11g47290Os.51998.1.S1_at9/1111+27872882..27880052Leucine Rich Repeat family protein
LOC_Os11g47300OsAffx.19418.1.S1_at11/1111+27885956..27889389Leucine Rich Repeat family protein
LOC_Os11g47310Os.49804.1.S1_at10/1111+27892823..27896499Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31525.1.S1_at--868--8712Chr11:27871737..27871761 (25 bp)
TGTCGCTCTCTCATCCTGCAAAGCG
LOC_Os11g47278
OsAffx.31525.1.S1_at--1081--9591Chr11:27871747..27872219 (25 bp)
TCATCCTGCAAAGCGGACGAGAGTA
LOC_Os11g47278
OsAffx.31525.1.S1_at--1041--5771Chr11:27872213..27872234 (22 bp)
GACGAGAGTACAGATGTGTGTTTCT
LOC_Os11g47278
OsAffx.31525.1.S1_at--784--7411Chr11:27872225..27872249 (25 bp)
GTGTGTTTCTATACGGGTCTCCGGG
LOC_Os11g47278
OsAffx.31525.1.S1_at--265--7811Chr11:27872240..27872264 (25 bp)
GGTCTCCGGGCATGCCAAGTGAGAA
LOC_Os11g47278
OsAffx.31525.1.S1_at--727--5951Chr11:27872260..27872284 (25 bp)
GAGAATGTGTGGAGCCTACTGCCTC
LOC_Os11g47278
OsAffx.31525.1.S1_at--717--8091Chr11:27872270..27872294 (25 bp)
GGAGCCTACTGCCTCAAATACTATG
LOC_Os11g47278
OsAffx.31525.1.S1_at--240--9911Chr11:27872276..27872300 (25 bp)
TACTGCCTCAAATACTATGGTAATT
LOC_Os11g47278
OsAffx.31525.1.S1_at--762--3111Chr11:27872297..27872321 (25 bp)
AATTTGGTAGACTGGAAAGGCGCCT
LOC_Os11g47278
OsAffx.31525.1.S1_at--1072--5571Chr11:27872311..27872335 (25 bp)
GAAAGGCGCCTACTGCAATGAGCAA
LOC_Os11g47278
OsAffx.31525.1.S1_at--38--4571Chr11:27872316..27872340 (25 bp)
GCGCCTACTGCAATGAGCAAGTGAA
LOC_Os11g47278
Target Sequence 
TGTCGCTCTCTCATCCTGCAAAGCGGACGAGAGTACAGATGTGTGTTTCTATACGGGTCTCCGGGCATGCCAAGTGAGAA
TGTGTGGAGCCTACTGCCTCAAATACTATGGTAATTTGGTAGACTGGAAAGGCGCCTACTGCAATGAGCAAGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis