Browse Element(s) Details


OsAffx.31534.1.S1_at

Description tigr:9640.m00012
TID=OsAffx.31534.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=homeodomain transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0113011/11Homeobox domain containing protein
LOC_Os12g0112011/11Homeobox domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01074Os.15933.1.A1_s_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.2.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_x_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.53942.1.S1_at11/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074OsAffx.31533.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01074Os.27486.1.S1_x_at10/1111+36564..43608RNase P subunit p30 family protein, expressed
LOC_Os11g01090NANA11+44371..50691retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g01100OsAffx.30760.1.S1_at11/1111+51332..52266hypothetical protein
LOC_Os11g01109OsAffx.30761.2.S1_s_at11/1111+52703..54852hypothetical protein
LOC_Os11g01109OsAffx.30761.1.S1_at4/1111+52703..54852hypothetical protein
LOC_Os11g01118NANA11+56826..57134hypothetical protein
LOC_Os11g01130OsAffx.31534.1.S1_at11/1111+67344..67955Homeobox domain containing protein
LOC_Os11g01140Os.8642.1.S1_a_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.8642.4.S1_x_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.53644.1.S1_at1/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009943biological_processadaxial/abaxial axis specification
GO:0009947biological_processcentrolateral axis specification
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0019827biological_processstem cell maintenance
GO:0045449biological_processregulation of transcription
GO:0048314biological_processembryo sac morphogenesis
GO:0048366biological_processleaf development
GO:0048437biological_processfloral organ development
GO:0048446biological_processpetal morphogenesis
GO:0048482biological_processovule morphogenesis
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0048353cellular_componentprimary endosperm nucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31534.1.S1_at--1033--9852Chr12:63459..63483 (25 bp)
TACAGGAGCGGCGTGCGAACGCCCA
LOC_Os12g01120
OsAffx.31534.1.S1_at--1123--4372Chr12:63481..63505 (25 bp)
CCAACGCGGCAGAGATCCAGCAAAT
LOC_Os12g01120
OsAffx.31534.1.S1_at--680--1352Chr12:63491..63515 (25 bp)
AGAGATCCAGCAAATCACGGCGCAC
LOC_Os12g01120
OsAffx.31534.1.S1_at--64--9432Chr12:63688..63712 (25 bp)
TCGTGCAGGTGCACCCCGCGGTGAT
LOC_Os12g01120
OsAffx.31534.1.S1_at--53--9032Chr12:63697..63721 (25 bp)
TGCACCCCGCGGTGATGCAGCTACA
LOC_Os12g01120
OsAffx.31534.1.S1_at--801--4672Chr12:63819..63843 (25 bp)
GCGGTGGACTACTGCAGCACTGCAT
LOC_Os12g01120
OsAffx.31534.1.S1_at--1143--9032Chr12:63831..63855 (25 bp)
TGCAGCACTGCATCGGCGTCAGCGT
LOC_Os12g01120
OsAffx.31534.1.S1_at--470--2552Chr12:63860..63884 (25 bp)
AACTGCTGCTGACATGGCGATCCCG
LOC_Os12g01120
OsAffx.31534.1.S1_at--981--4772Chr12:63889..63913 (25 bp)
GCTGCCGGCCGCTGAAAACGTTGGA
LOC_Os12g01120
OsAffx.31534.1.S1_at--799--7592Chr12:63901..63925 (25 bp)
TGAAAACGTTGGAGCTGTTCCCGAC
LOC_Os12g01120
OsAffx.31534.1.S1_at--144--8812Chr12:63916..63940 (25 bp)
TGTTCCCGACCAAGAGCACCAGCGG
LOC_Os12g01120
Target Sequence 
TACAGGAGCGGCGTGCGAACGCCCAACGCGGCAGAGATCCAGCAAATCACGGCGCACCTCGCCTACTACGGCCGCATCGA
GGGCAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCGAGCGCCAGCGCCTCCGCCGCCGCCTCTGCGCGCGGC
ACCAGCAGCAACCCTCACCGCCCTCCTCCACGGTGCCTCCGGCTCCCACTGCTGCTGCTGCCGGTGCCGTCGTGCAGGTG
CACCCCGCGGTGATGCAGCTACACCACCACCACCACCACCATCACCCATACGCTGCGGCCGCCGCTGCCCAAAGTCATCA
CCTGCAGCAGCAGCAGCAGCAGCAAGCTGAGTGGCCGGCGGCGGTGGACTACTGCAGCACTGCATCGGCGTCAGCGTCGG
CAACTGCTGCTGACATGGCGATCCCGCCGTGCTGCCGGCCGCTGAAAACGTTGGAGCTGTTCCCGACCAAGAGCACCAGC
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis