Browse Element(s) Details


OsAffx.31552.1.S1_x_at

Description tigr:9640.m00141
TID=OsAffx.31552.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g273905/11hypothetical protein
LOC_Os12g108005/11transposon protein, putative, Mutator sub-class
LOC_Os01g034524/11hypothetical protein
LOC_Os12g215103/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27350OsAffx.17666.1.S1_at1/1112+16075841..16079351Transferase family protein
LOC_Os12g27370NANA12+16091863..16094964AT hook motif-containing protein, putative
LOC_Os12g27380OsAffx.31902.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27380Os.52631.1.S1_x_at11/1112+16095362..16099707hypothetical protein
LOC_Os12g27390OsAffx.31552.1.S1_x_at5/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.31552.2.S1_at4/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.31552.3.S1_x_at3/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.11270.1.S1_at2/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.22940.1.S1_s_at1/1112+16103216..16110477hypothetical protein
LOC_Os12g27390OsAffx.11270.1.S1_x_at1/1112+16103216..16110477hypothetical protein
LOC_Os12g27400NANA12+16126660..16129579transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27410OsAffx.22442.1.S1_x_at1/1112+16130178..16135749retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31552.1.S1_x_at--364--8111Chr12:770226..770250 (25 bp)
GGACGCCGGGCTATACTTGAGTGAT
NONE
OsAffx.31552.1.S1_x_at--761--6154Chr12:770259..770283 (25 bp)
GAGGATTACCTTCGACCGGATGCAA
NONE
OsAffx.31552.1.S1_x_at--112--2791Chr12:770282..770306 (25 bp)
AAGAGAAGATGCACGCTGTCATGCG
NONE
OsAffx.31552.1.S1_x_at--257--9572Chr12:770309..770333 (25 bp)
TCTTCTCTTGTTGCAGCGCCATGGA
NONE
OsAffx.31552.1.S1_x_at--870--10054Chr12:770379..770403 (25 bp)
TAGTACCGGAGTTGTGCGACCTACA
NONE
OsAffx.31552.1.S1_x_at--1104--9853Chr12:770400..770424 (25 bp)
TACAGCTGGTTCTTCGCACGGTACT
NONE
OsAffx.31552.1.S1_x_at--897--7992Chr12:770536..770560 (25 bp)
GGAGGCAGCAGTTCGTCACAGAGAT
NONE
OsAffx.31552.1.S1_x_at--150--7975Chr12:770594..770618 (25 bp)
GGATCTTTGCTAGTGGAGCCTCTTC
NONE
OsAffx.31552.1.S1_x_at--969--8691Chr12:770646..770670 (25 bp)
TGTCCGGTTCTACGATGACGACTTG
NONE
OsAffx.31552.1.S1_x_at--658--1273Chr12:770690..770714 (25 bp)
AGATACTTGGGTCCTCACAGCTTGG
NONE
OsAffx.31552.1.S1_x_at--601--8933Chr12:770804..770828 (25 bp)
TGACGTACTCCCAGGGACACGTTAG
NONE
Target Sequence 
GGACGCCGGGCTATACTTGAGTGATGCTGAGCAGAGGATTACCTTCGACCGGATGCAAGAGAAGATGCACGCTGTCATGC
GCGTCTTCTCTTGTTGCAGCGCCATGGACGCGGTACCTCCACCTGGTCCAGTACCACCATGTCCACGCGCCCCTAGTACC
GGAGTTGTGCGACCTACAGCTGGTTCTTCGCACGGTACTGCTCCGCCCAGAGGTCCCCGTCTGCCTTCCGGCGCCTTTGT
CGGAGGCAGCAGTTCGTCACAGAGATCGCTGATCCCTCGTCCTAACACGCAGACGCGAGGGATCTTTGCTAGTGGAGCCT
CTTCCTCACACGCCGGTGGCACAGGTCCTACTGTCCGGTTCTACGATGACGACTTGCACGGGGCGCCAGACCAGGAGATA
CTTGGGTCCTCACAGCTTGGTGGAGCTCCGAAGGCGCACACCCAGGAGCAGCCACTGGTCACACCAGTGCAGGAGGGTCG
AGCAGGCCGTGCCGTACCACCGGACCGTCTGACGTACTCCCAGGGACACGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31552.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis