Browse Element(s) Details


OsAffx.31583.1.S1_at

Description tigr:9640.m00397
TID=OsAffx.31583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0479011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04750Os.17839.1.A1_at11/1112+2016495..2021865expressed protein
LOC_Os12g04760OsAffx.31582.1.S1_at11/1112+2026019..2026433hypothetical protein
LOC_Os12g04770Os.53848.1.S1_at10/1112+2027660..2029698hypothetical protein
LOC_Os12g04790OsAffx.31583.1.S1_at11/1112+2040778..2044195expressed protein
LOC_Os12g04800OsAffx.828.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04800OsAffx.15503.1.S1_x_at1/1112+2045502..2047557retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04810Os.27691.1.S1_x_at7/1112+2050022..2055918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04810Os.27691.2.S1_x_at5/1112+2050022..2055918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04820NANA12+2059349..2061642hypothetical protein
LOC_Os12g04830Os.46715.1.S1_x_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04830Os.46715.1.S1_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04830OsAffx.22947.2.S1_x_at1/1112+2068534..2074314retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31583.1.S1_at--225--7391Chr12:2041712..2041736 (25 bp)
GTGAGATTCATCCAAGAGCAAGACT
LOC_Os12g04790
OsAffx.31583.1.S1_at--456--2871Chr12:2043401..2043425 (25 bp)
AAGTGTGGTGAACATTGCCATCGAA
LOC_Os12g04790
OsAffx.31583.1.S1_at--237--6131Chr12:2043468..2043492 (25 bp)
GAGTGTGATCCGACCTATGCATATA
LOC_Os12g04790
OsAffx.31583.1.S1_at--278--5511Chr12:2043561..2043585 (25 bp)
GAACAATGCATAAAACCCCTTCCCA
LOC_Os12g04790
OsAffx.31583.1.S1_at--178--5251Chr12:2043616..2043640 (25 bp)
GAATCTATTGCTGTCCGGGTGATGA
LOC_Os12g04790
OsAffx.31583.1.S1_at--190--7711Chr12:2043667..2043691 (25 bp)
GGGTCGAAATGTGCAATCAGCCGCT
LOC_Os12g04790
OsAffx.31583.1.S1_at--1074--3071Chr12:2043681..2043705 (25 bp)
AATCAGCCGCTTCAGATGTCCGAAG
LOC_Os12g04790
OsAffx.31583.1.S1_at--521--8531Chr12:2044009..2044033 (25 bp)
TGGACATGAGTTCTCGCACAACTGC
LOC_Os12g04790
OsAffx.31583.1.S1_at--281--2211Chr12:2044026..2044050 (25 bp)
ACAACTGCGCGGTGAGTGTTTCGGC
LOC_Os12g04790
OsAffx.31583.1.S1_at--537--11Chr12:2044040..2044064 (25 bp)
AGTGTTTCGGCAGAGTTCGGGACTC
LOC_Os12g04790
OsAffx.31583.1.S1_at--178--3331Chr12:2044107..2044131 (25 bp)
CACTTTCATATCATCTTACTGCCAG
LOC_Os12g04790
Target Sequence 
GTGAGATTCATCCAAGAGCAAGACTTGTGGGAGGCAAAATAGACTTATTCCTAGTGTATAATGGCATTTATAGAAGTGTG
GTGAACATTGCCATCGAAAAAACTCCAGAAAGAACTATTCGGCAAAATGGTATTATTGTGGAGTGTGATCCGACCTATGC
ATATATTGTAGCAGATGCTCGTGCGTTTGAGGGAAATATTGCAGCTGATAAAATCACGGTTGACTTTCCGGGGGAACAAT
GCATAAAACCCCTTCCCAAGCACTGTAATATTACAAATGGATTGGTTGGAATCTATTGCTGTCCGGGTGATGAAAAGTTC
AATACCGATCTTTTTAAGAGGGTCGAAATGTGCAATCAGCCGCTTCAGATGTCCGAAGCAGTGACATTGAATGGACATGA
GTTCTCGCACAACTGCGCGGTGAGTGTTTCGGCAGAGTTCGGGACTCCGGTGATCAACAAGAATGGAGAACTGGTGGGGA
TGAATTGTTCACTTTCATATCATCTTACTGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis