Browse Element(s) Details


OsAffx.31593.1.S1_at

Description tigr:9640.m00452
TID=OsAffx.31593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0534011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05310Os.53737.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05310Os.51693.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05320Os.56249.1.A1_at11/1112+2388855..2394275expressed protein
LOC_Os12g05330Os.27230.1.A1_at11/1112+2394804..2396717expressed protein
LOC_Os12g05340OsAffx.31593.1.S1_at11/1112+2406163..2406522hypothetical protein
LOC_Os12g05350NANA12+2410369..2411119hypothetical protein
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31593.1.S1_at--848--7211Chr12:2406217..2406241 (25 bp)
GTCGATGCCCTCTTTCGGCTGCGAC
LOC_Os12g05340
OsAffx.31593.1.S1_at--581--8331Chr12:2406233..2406257 (25 bp)
GGCTGCGACTGCTGTCATCATCGAG
LOC_Os12g05340
OsAffx.31593.1.S1_at--414--4731Chr12:2406243..2406267 (25 bp)
GCTGTCATCATCGAGGTCGCCATCA
LOC_Os12g05340
OsAffx.31593.1.S1_at--700--391Chr12:2406264..2406288 (25 bp)
ATCACCATCTATTGCGTTGTCGAGG
LOC_Os12g05340
OsAffx.31593.1.S1_at--524--4331Chr12:2406268..2406292 (25 bp)
CCATCTATTGCGTTGTCGAGGTCGC
LOC_Os12g05340
OsAffx.31593.1.S1_at--416--7111Chr12:2406294..2406318 (25 bp)
GTCACCATCCATTGCGTGTCGAGGT
LOC_Os12g05340
OsAffx.31593.1.S1_at--863--3591Chr12:2406303..2406327 (25 bp)
CATTGCGTGTCGAGGTCTGACGTCG
LOC_Os12g05340
OsAffx.31593.1.S1_at--586--3572Chr12:2406393..2406417 (25 bp)
CATATGGGACCCAATGTCATACTCT
LOC_Os12g05340
OsAffx.31593.1.S1_at--283--5811Chr12:2406400..2406424 (25 bp)
GACCCAATGTCATACTCTCGGAATG
LOC_Os12g05340
OsAffx.31593.1.S1_at--760--6091Chr12:2406450..2406474 (25 bp)
GAGTGAACAAGAGTTTGGCTCTTCA
LOC_Os12g05340
OsAffx.31593.1.S1_at--467--6871Chr12:2406462..2406486 (25 bp)
GTTTGGCTCTTCAAATCAGTTGGAG
LOC_Os12g05340
Target Sequence 
GTCGATGCCCTCTTTCGGCTGCGACTGCTGTCATCATCGAGGTCGCCATCACCATCTATTGCGTTGTCGAGGTCGCCGTC
ACCATCCATTGCGTGTCGAGGTCTGACGTCGGGGAGAAAAGAGGAAGAGGAGGGGAGGGTGAGAAAGAGGAGGAAGAAGG
AGGCAGTAGAGGCTGACATATGGGACCCAATGTCATACTCTCGGAATGGAGAGGGTAAATGGAGAGACTGTTGGAGTGAA
CAAGAGTTTGGCTCTTCAAATCAGTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis