Browse Element(s) Details


OsAffx.31629.1.S1_at

Description tigr:9640.m00650
TID=OsAffx.31629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calcium-dependent protein kinase ZmCPK11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0723011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07190Os.21230.1.S1_at11/1112+3530358..3535425CBS domain-containing protein, putative, expressed
LOC_Os12g07200NANA12+3537613..3538138hypothetical protein
LOC_Os12g07210Os.5725.1.S1_at1/1112+3541704..3543482Fructose-bisphosphate aldolase class-I family protein
LOC_Os12g07220Os.9938.1.S1_at11/1112+3548137..3551609expressed protein
LOC_Os12g07230OsAffx.31629.1.S1_at11/1112+3552653..3557399Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os12g07240OsAffx.19527.1.S1_at11/1112+3562173..3562925hypothetical protein
LOC_Os12g07250OsAffx.31630.1.S1_at11/1112+3564998..3565556hypothetical protein
LOC_Os12g07260Os.16889.1.S1_a_at11/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07260OsAffx.29329.1.S1_x_at1/1112+3565995..3570970DNA-binding protein, putative, expressed
LOC_Os12g07270Os.53475.1.A1_at10/1112+3572432..3575996Sodium Bile acid symporter family protein, expressed
LOC_Os12g07280Os.50556.1.S1_at11/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed
LOC_Os12g07280OsAffx.13726.1.S1_x_at2/1112+3579170..3581837Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31629.1.S1_at--248--1031Chr12:3553284..3553308 (25 bp)
AGGGTGGGCTCAGATCTAATGGAAC
LOC_Os12g07230
OsAffx.31629.1.S1_at--268--4891Chr12:3553138..3553272 (25 bp)
GCTTTAATGGATGCCGCTGATATTG
LOC_Os12g07230
OsAffx.31629.1.S1_at--716--10111Chr12:3553093..3553117 (25 bp)
TATGGTGAATTCTTAGCAGCTACTT
LOC_Os12g07230
OsAffx.31629.1.S1_at--552--7451Chr12:3553033..3553057 (25 bp)
GTGTCAGCATTCACGTTCTTTGATA
LOC_Os12g07230
OsAffx.31629.1.S1_at--785--8291Chr12:3552997..3553021 (25 bp)
GGCTTCATAACCATTGATGAGCTCT
LOC_Os12g07230
OsAffx.31629.1.S1_at--152--5171Chr12:3552971..3552995 (25 bp)
GCAAGCCTGCGAACAGTTTGGCCTT
LOC_Os12g07230
OsAffx.31629.1.S1_at--605--1191Chr12:3552957..3552981 (25 bp)
AGTTTGGCCTTTCTGATGTTCATCT
LOC_Os12g07230
OsAffx.31629.1.S1_at--116--10791Chr12:3552783..3552807 (25 bp)
TTGATTACAGCGAGTTTGCCGCGAT
LOC_Os12g07230
OsAffx.31629.1.S1_at--1093--5851Chr12:3552735..3552759 (25 bp)
GAGCCAATGCTGGTGGAGTCACTTC
LOC_Os12g07230
OsAffx.31629.1.S1_at--729--6091Chr12:3552720..3552744 (25 bp)
GAGTCACTTCTACTGGTGGAACAGG
LOC_Os12g07230
OsAffx.31629.1.S1_at--368--8891Chr12:3552684..3552708 (25 bp)
TGAGGAACAGCTTGCGTGTGAATCT
LOC_Os12g07230
Target Sequence 
AGGGTGGGCTCAGATCTAATGGAACCAGAAATCCAGGCTTTAATGGATGCCGCTGATATTGACAACAGTGGAACCATCGA
CTATGGTGAATTCTTAGCAGCTACTTTGCACATGAATAAACTGGAGAGGGAGGAAAACTTGGTGTCAGCATTCACGTTCT
TTGATAAGGATGGAAGTGGCTTCATAACCATTGATGAGCTCTCGCAAGCCTGCGAACAGTTTGGCCTTTCTGATGTTCAT
CTTGAGGATATGATCAAAGATGTGGATCAAAATAATGATGGACAAATTGATTACAGCGAGTTTGCCGCGATGATGAGAAA
GGGCAATGCTGGTGGAGCCAATGCTGGTGGAGTCACTTCTACTGGTGGAACAGGAAGGAGAACAATGAGGAACAGCTTGC
GTGTGAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis