Browse Element(s) Details


OsAffx.31631.1.S1_at

Description tigr:9640.m00668
TID=OsAffx.31631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g073908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31631.1.S1_at--973--9111NONE
TGCTGTGGACTCAGAAGAACTGCCT
NONE
OsAffx.31631.1.S1_at--171--7531NONE
GTGGACTCAGAAGAACTGCCTCCAT
NONE
OsAffx.31631.1.S1_at--647--2011NONE
ACTCAGAAGAACTGCCTCCATCGCG
NONE
OsAffx.31631.1.S1_at--618--5331Chr12:3643725..3643749 (25 bp)
GAAGTCTTCTTCGATCCCGTGTGAG
LOC_Os12g07390
OsAffx.31631.1.S1_at--779--4191Chr12:3643740..3643764 (25 bp)
CCCGTGTGAGGGTAGTGAGGTCCTC
LOC_Os12g07390
OsAffx.31631.1.S1_at--476--8611Chr12:3643785..3643809 (25 bp)
TGTCGAGGAATGTCCCGGGGTCCAT
LOC_Os12g07390
OsAffx.31631.1.S1_at--55--3511Chr12:3643807..3643831 (25 bp)
CATGGAGTGCTGGTTGGAGGAGTCT
LOC_Os12g07390
OsAffx.31631.1.S1_at--48--2231Chr12:3643851..3643875 (25 bp)
ACAAGATGCCTAATGTTGTTATCAA
LOC_Os12g07390
OsAffx.31631.1.S1_at--912--6351Chr12:3643855..3643879 (25 bp)
GATGCCTAATGTTGTTATCAAACAA
LOC_Os12g07390
OsAffx.31631.1.S1_at--974--3951Chr12:3643905..3643929 (25 bp)
CGGAGTACGCCTACACCGAGGAGGA
LOC_Os12g07390
OsAffx.31631.1.S1_at--1038--6071Chr12:3643907..3643931 (25 bp)
GAGTACGCCTACACCGAGGAGGAGC
LOC_Os12g07390
Target Sequence 
TGCTGTGGACTCAGAAGAACTGCCTCCATCGCGCGCGGGCGATGGCGGCCAGGAACAAGGAGGAAGTCTTCTTCGATCCC
GTGTGAGGGTAGTGAGGTCCTCAAGAAGGAGGCCTCTCTGGGTGTCGAGGAATGTCCCGGGGTCCATGGAGTGCTGGTTG
GAGGAGTCTGGGAAGAAGGTGGTCAAGTACAAGATGCCTAATGTTGTTATCAAACAAATGATGAGCTACCCCTACACCTA
CCCGGAGTACGCCTACACCGAGGAGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis