Browse Element(s) Details


OsAffx.31631.1.S1_s_at

Description tigr:9640.m00668
TID=OsAffx.31631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0739011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07350OsAffx.7511.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07350Os.55062.1.S1_at11/1112+3618359..3625515tRNA-nucleotidyltransferase, putative, expressed
LOC_Os12g07370Os.18980.1.A1_at11/1112+3628848..3631008csAtPR5, putative, expressed
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31631.1.S1_s_at--78--2271Chr12:3641461..3641485 (25 bp)
AAAGTCAAGACCAACCGTATCCTCA
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--1088--2611Chr12:3641473..3641497 (25 bp)
AACCGTATCCTCAAAAAGCCTTATG
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--169--1691Chr12:3641489..3641513 (25 bp)
AGCCTTATGATTTCAACCCTGACGG
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--185--8951Chr12:3641508..3641532 (25 bp)
TGACGGCCGTATTGTACCAGCTGAC
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--528--6971Chr12:3641521..3641545 (25 bp)
GTACCAGCTGACAAACCATCTCAGA
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--17--8211Chr12:3641568..3641592 (25 bp)
GGAATTCTTACATGCACTGGGTCTA
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--1145--1211Chr12:3641583..3641607 (25 bp)
ACTGGGTCTAACTCCTATTCGAGGA
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--422--6191Chr12:3641603..3641627 (25 bp)
GAGGACAGAAATCGCTTACCCCTGA
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--341--10471Chr12:3641618..3641642 (25 bp)
TTACCCCTGATCAGATCGCCTTAAT
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--998--6371Chr12:3641631..3641655 (25 bp)
GATCGCCTTAATTGAAACTCTGTTC
LOC_Os12g07390
OsAffx.31631.1.S1_s_at--408--10831Chr12:3641716..3641740 (25 bp)
TTGGGCTATAATGCTGTGGACTCAG
LOC_Os12g07390
Target Sequence 
AAAGTCAAGACCAACCGTATCCTCAAAAAGCCTTATGATTTCAACCCTGACGGCCGTATTGTACCAGCTGACAAACCATC
TCAGACATGCCTCAACAAACGTCAGAGGGAATTCTTACATGCACTGGGTCTAACTCCTATTCGAGGACAGAAATCGCTTA
CCCCTGATCAGATCGCCTTAATTGAAACTCTGTTCTTCTTTGATTTTCTGAGAAATAGGACATCTCACAGGATGGATCCA
TGGAGGAGCCTGATTTTGGGCTATAATGCTGTGGACTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31631.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis