Browse Element(s) Details


OsAffx.31677.1.S1_x_at

Description tigr:9640.m00961
TID=OsAffx.31677.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=transmembrane amino acid transporter protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g102405/11amino acid carrier, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10270OsAffx.31678.2.S1_at11/1112+5431561..5433649hAT family dimerisation domain containing protein
LOC_Os12g10280OsAffx.7548.1.S1_at11/1112+5434714..5438021Major intrinsic protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31677.1.S1_x_at--1060--3331Chr12:5410937..5411166 (25 bp)
CACGAGCGGAAAGGCACGGTATGGG
LOC_Os12g10240
OsAffx.31677.1.S1_x_at--895--8131Chr12:5410930..5410950 (21 bp)
GGAAAGGCACGGTATGGGCGGCGAC
LOC_Os12g10240
OsAffx.31677.1.S1_x_at--253--2931Chr12:5410927..5410950 (24 bp)
AAGGCACGGTATGGGCGGCGACGGC
LOC_Os12g10240
OsAffx.31677.1.S1_x_at--256--4591Chr12:5410910..5410934 (25 bp)
GCGACGGCACACATTGTTACGGCGG
LOC_Os12g10240
OsAffx.31677.1.S1_x_at--211--3312Chr05:753918..753942 (25 bp)
CACACATTGTTACGGCGGTGATCGG
NONE
OsAffx.31677.1.S1_x_at--615--8851NONE
TGATCGGCTCCGGTGTGCTGACACT
NONE
OsAffx.31677.1.S1_x_at--36--6411NONE
GATCGGCTCCGGTGTGCTGACACTG
NONE
OsAffx.31677.1.S1_x_at--597--491NONE
ATCGGCTCCGGTGTGCTGACACTGG
NONE
OsAffx.31677.1.S1_x_at--424--9451NONE
TCGGCTCCGGTGTGCTGACACTGGC
NONE
OsAffx.31677.1.S1_x_at--320--9291NONE
TCCGGTGTGCTGACACTGGCGTGGA
NONE
OsAffx.31677.1.S1_x_at--353--8691NONE
TGTGCTGACACTGGCGTGGAGCGGG
NONE
Target Sequence 
CACGAGCGGAAAGGCACGGTATGGGCGGCGACGGCACACATTGTTACGGCGGTGATCGGCTCCGGTGTGCTGACACTGGC
GTGGAGCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31677.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis