Browse Element(s) Details


OsAffx.31678.3.S1_x_at

Description tigr:9640.m00962
TID=OsAffx.31678.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1025011/11zinc finger family protein, putative, expressed
LOC_Os08g032601/11von Willebrand factor type A domain containing protein
LOC_Os12g102601/11hAT family dimerisation domain containing protein
LOC_Os08g032701/11von Willebrand factor type A domain containing protein
LOC_Os10g327501/11von Willebrand factor type A domain containing protein
LOC_Os09g261601/11Receptor family ligand binding region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10270OsAffx.31678.2.S1_at11/1112+5431561..5433649hAT family dimerisation domain containing protein
LOC_Os12g10280OsAffx.7548.1.S1_at11/1112+5434714..5438021Major intrinsic protein, expressed
LOC_Os12g10290NANA12+5439409..5439792hypothetical protein
LOC_Os12g10300NANA12+5441629..5441876retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006874biological_processcalcium ion homeostasis
GO:0009416biological_processresponse to light stimulus
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005217molecular_functionintracellular ligand-gated ion channel activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31678.3.S1_x_at--813--9533Chr12:5416074..5416098 (25 bp)
TCTACGCCGACGAGGAGCGCCGCTT
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--39--10771Chr12:5416110..5416134 (25 bp)
TTGACGTGCCTCGAGCCGACGGCGA
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--992--1631Chr12:5416160..5416184 (25 bp)
AGCGTGCGCTGCACGTACCGGGACA
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--687--9151Chr12:5416164..5416188 (25 bp)
TGCGCTGCACGTACCGGGACACGGC
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--230--1931Chr12:5416190..5416214 (25 bp)
ACGGAGCAGTCGGTGGACGTGGCCG
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--221--4231Chr12:5416265..5416289 (25 bp)
CCGTCCATGGAGGTTGAGCTTGAGC
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--300--1551Chr12:5416281..5416305 (25 bp)
AGCTTGAGCGCGAGCGCGTCCGCCT
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--1161--9095Chr12:5422354..5422378 (25 bp)
TGCTCGCCGGCATGAGCTCGCACGG
LOC_Os12g10260
OsAffx.31678.3.S1_x_at--391--3391Chr12:5416553..5416577 (25 bp)
CAGCGCGCCTCGTCGGTGCAGCTAG
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--538--9931Chr12:5416590..5416614 (25 bp)
TACGGGTGTTCGTCCGTGTTCGCGA
LOC_Os12g10250
OsAffx.31678.3.S1_x_at--822--3991Chr12:5416604..5416628 (25 bp)
CGTGTTCGCGACACCGGAGATGCAG
LOC_Os12g10250
Target Sequence 
TCTACGCCGACGAGGAGCGCCGCTTCCTGCTCCTCCTTGACGTGCCTCGAGCCGACGGCGACGCCGCCGTCGCCACGCGC
CTCGCCAGCGTGCGCTGCACGTACCGGGACACGGCGACGGAGCAGTCGGTGGACGTGGCCGGCGAGGAAGACGCCGTGGT
CCTCCGCCCCGCCGTCGCGACGGGCGTGGCGCCGTCCATGGAGGTTGAGCTTGAGCGCGAGCGCGTCCGCCTCGAGGCGG
CGGACGACATCGCGCTGGCGCGCGCGGCGGCCGAGCGGGGCGCCTACGGCGAGGCGGCAAGGATCCTCGACGCGAGGCGG
GAGGCGCTGAGCAGGTCGGCGCCGGCGGCGTCCGGCGACGCCATGTGCGCGGCGCTGGTGGCGGAGCTGCGGGAGCTGAG
CGAGCGCGTGGCGGACGAGCGGGAGTACGCGCAGACGGGGCGCGCGTGCGTGCTCGCCGGCATGAGCTCGCACGGGCAGC
AGCGCGCCTCGTCGGTGCAGCTAGGGGAGCTCCGTGTACGGGTGTTCGTCCGTGTTCGCGACACCGGAGATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31678.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis