Browse Element(s) Details


OsAffx.31681.1.S1_at

Description tigr:9640.m00973
TID=OsAffx.31681.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR-like protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1039011/11NB-ARC domain containing protein
LOC_Os12g1036011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10340Os.54200.1.S1_at11/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10340OsAffx.31684.1.S1_at1/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10350OsAffx.31679.1.S1_at11/1112+5481289..5481552hypothetical protein
LOC_Os12g10360OsAffx.31681.1.S1_at11/1112+5485083..5487011NB-ARC domain containing protein
LOC_Os12g10370OsAffx.19590.1.S1_at11/1112+5488242..5488692hypothetical protein
LOC_Os12g10380NANA12+5496679..5497035hypothetical protein
LOC_Os12g10390OsAffx.31681.1.S1_at11/1112+5497827..5499710NB-ARC domain containing protein
LOC_Os12g10400OsAffx.31682.1.S1_at11/1112+5500645..5505129NB-ARC domain containing protein
LOC_Os12g10410Os.53446.1.S1_at11/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10410OsAffx.25541.1.S1_at1/1112+5507791..5513984NB-ARC domain containing protein, expressed
LOC_Os12g10420OsAffx.18200.1.S1_at1/1112+5521618..5523731retrotransposon protein, putative, unclassified
LOC_Os12g10430OsAffx.22699.1.S1_x_at1/1112+5523867..5528355retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31681.1.S1_at--24--3832Chr12:5498384..5498408 (25 bp)
CTGCCAGAGCTGCAAGTTTGCTTTC
LOC_Os12g10390
OsAffx.31681.1.S1_at--670--5892Chr12:5498378..5498402 (25 bp)
GAGCTGCAAGTTTGCTTTCGGTATT
LOC_Os12g10390
OsAffx.31681.1.S1_at--1065--1232Chr12:5498314..5498338 (25 bp)
AGTTGGTGCAGACATGGATTTCGTC
LOC_Os12g10390
OsAffx.31681.1.S1_at--582--332Chr12:5498235..5498259 (25 bp)
ATACTTGGCTCGGTTGACTGCAAAA
LOC_Os12g10390
OsAffx.31681.1.S1_at--217--3992Chr12:5498076..5498100 (25 bp)
CGTGAATAGTTCAGTTCGGCACATT
LOC_Os12g10390
OsAffx.31681.1.S1_at--523--1233Chr12:5498064..5498088 (25 bp)
AGTTCGGCACATTAATATTGCAGGT
LOC_Os12g10390
OsAffx.31681.1.S1_at--959--5372Chr12:5497995..5498019 (25 bp)
GAAGAAGCTGCGCACGATCATCGTT
LOC_Os12g10390
OsAffx.31681.1.S1_at--345--1872Chr12:5497982..5498006 (25 bp)
ACGATCATCGTTGAAGATTGTGGCC
LOC_Os12g10390
OsAffx.31681.1.S1_at--711--2012Chr12:5497912..5497936 (25 bp)
ACTCAAAATCCCTGCGTTTGTTGGA
LOC_Os12g10390
OsAffx.31681.1.S1_at--388--10592Chr12:5497884..5497908 (25 bp)
TTCTCTGTTCAAGAGGTGGCATTTC
LOC_Os12g10390
OsAffx.31681.1.S1_at--652--2792Chr12:5497874..5497898 (25 bp)
AAGAGGTGGCATTTCCCTGACGGAC
LOC_Os12g10390
Target Sequence 
CTGCCAGAGCTGCAAGTTTGCTTTCGGTATTGNAGCATATTTNGGAAAAACCATCCNTTCAGAAAAGAGNAGTTGGTGCA
GACATGGATTTCGTCNGGNTTGATCTCTGCTCAATNTCGTGGGGAAAANAAAGAGAANTTGGGAGAGTTATACTTGGCTC
GGTTGACTGCAAAATCNTTCTTTGATCGCTTTGGCNGAGAAGACGATGAACNTGCATACTATGTTATGAATGACATGATG
TANGANNTGGCANNATNTGTCTCNCGTGGTGAATGTGCGAGGCTAGTTNNTNCTGCAGACTTTANACNCGTGAATAGTTC
AGTTCGGCACATTAATATTGCAGGTATTAACAATTTCANCGTTGGTGATGTGNAGGAGTTGCTCCGTTTGAAGAAGCTGC
GCACGATCATCGTTGAAGATTGTGGCCATGTCCAGNAGGAAGTGGTATCTGCAATGGCGNAGGTTGTGNAGAACTCAAAA
TCCCTGCGTTTGTTGGANTGTTCTCTGTTCAAGAGGTGGCATTTCCCTGACGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis