Browse Element(s) Details


OsAffx.31694.1.S1_at

Description tigr:9640.m01042
TID=OsAffx.31694.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1101011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10940OsAffx.19604.1.S1_at11/1112+5912672..5913127hypothetical protein
LOC_Os12g10950OsAffx.31692.1.S1_at11/1112+5914418..5914639hypothetical protein
LOC_Os12g10960OsAffx.31693.1.S1_at11/1112+5916307..5916696hypothetical protein
LOC_Os12g10970Os.45976.1.S1_x_at3/1112+5918841..5922586transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g10980NANA12+5923819..5924433hypothetical protein
LOC_Os12g10990Os.46306.1.S1_x_at2/1112+5928721..5929224transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.46314.2.S1_x_at5/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.47114.1.S1_x_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000OsAffx.32036.1.S1_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11000Os.10731.2.A1_at1/1112+5931229..5935080transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g11010OsAffx.31694.1.S1_at11/1112+5936852..5938648hypothetical protein
LOC_Os12g11020NANA12+5943481..5945416retrotransposon protein, putative, unclassified
LOC_Os12g11030NANA12+5948647..5952521retrotransposon protein, putative, unclassified
LOC_Os12g11040OsAffx.19606.1.S1_at10/1112+5956927..5960227hypothetical protein
LOC_Os12g11050OsAffx.31695.1.S1_at11/1112+5961095..5962865hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31694.1.S1_at--77--1171Chr12:5937988..5938012 (25 bp)
AGTCATCTTGCACGTGATTAGCAAG
LOC_Os12g11010
OsAffx.31694.1.S1_at--346--4711Chr12:5938054..5938078 (25 bp)
GCTGGCTGGCTATGGACTTGTGGAG
LOC_Os12g11010
OsAffx.31694.1.S1_at--972--10091Chr12:5938143..5938227 (25 bp)
TATGGACCATGTGTGAGTGGAGATC
LOC_Os12g11010
OsAffx.31694.1.S1_at--648--3331Chr12:5938242..5938266 (25 bp)
CACTGCCTCGTCGACATCTATGTGT
LOC_Os12g11010
OsAffx.31694.1.S1_at--208--7231Chr12:5938251..5938275 (25 bp)
GTCGACATCTATGTGTCTCCGACAT
LOC_Os12g11010
OsAffx.31694.1.S1_at--514--9071Chr12:5938288..5938312 (25 bp)
TGCTTCGATTTCATCGTTCAGCCCT
LOC_Os12g11010
OsAffx.31694.1.S1_at--681--6531Chr12:5938294..5938318 (25 bp)
GATTTCATCGTTCAGCCCTGCGCAT
LOC_Os12g11010
OsAffx.31694.1.S1_at--688--8811Chr12:5938470..5938494 (25 bp)
TGTTGGAACACGGAGAGGCGCCCTC
LOC_Os12g11010
OsAffx.31694.1.S1_at--453--3991Chr12:5938500..5938524 (25 bp)
CGTGGCCTCACTACCGGTGGAGTTC
LOC_Os12g11010
OsAffx.31694.1.S1_at--674--10591Chr12:5938522..5938546 (25 bp)
TTCTCGCCGCTATATCGACATCGGG
LOC_Os12g11010
OsAffx.31694.1.S1_at--769--4871Chr12:5938530..5938554 (25 bp)
GCTATATCGACATCGGGCCGCACCT
LOC_Os12g11010
Target Sequence 
AGTCATCTTGCACGTGATTAGCAAGGGAGAGGAGAGAGAGACAAGATGGTTGCAGAGAGTTTGTTGGCTGGCTGGCTATG
GACTTGTGGAGGGAATGCATGTGTCGCTGCTGCTGGTACAGTTGGGCAGAGAGGTTGCTGGACGTGGACTTGGTCTATGG
ACCATGTGTGAGTGGAGATCGAGTTTGCGTCGCCCACTGCCTCGTCGACATCTATGTGTCTCCGACATCGGCATCGACTC
TGCTTCGATTTCATCGTTCAGCCCTGCGCATCTTCGGCTTGATCACCCGTTCAGGTGCCCGGCTACAACGACTTCTGTAA
CCAATCGTTATCGAGCATGCGTCTACGCCATCAATCTTCGGGTTGCCGCTGCGTTGCCCCCTTGGGCTGCAGTGCCGCCG
CCCGTGGTCCACCTCCACTGGTTGTTGGAACACGGAGAGGCGCCCTCCTCAGCGTGGCCTCACTACCGGTGGAGTTCTCG
CCGCTATATCGACATCGGGCCGCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis