Browse Element(s) Details


OsAffx.31705.2.S1_at

Description tigr:9640.m01111
TID=OsAffx.31705.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1168011/11Leucine Rich Repeat family protein
LOC_Os12g1201010/11Leucine Rich Repeat family protein
LOC_Os12g121204/11Leucine Rich Repeat family protein, expressed
LOC_Os12g117204/11Leucine Rich Repeat family protein
LOC_Os12g119301/11Leucine Rich Repeat family protein, expressed
LOC_Os12g118601/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g11650NANA12+6316318..6320934retrotransposon protein, putative, unclassified
LOC_Os12g11660Os.51554.1.S1_at10/1112+6323887..6324535expressed protein
LOC_Os12g11670Os.40360.1.S1_x_at1/1112+6330437..6333049hypothetical protein
LOC_Os12g11680OsAffx.31705.2.S1_at11/1112+6339847..6342846Leucine Rich Repeat family protein
LOC_Os12g11690OsAffx.7559.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.55898.1.S1_at11/1112+6343486..6346006expressed protein
LOC_Os12g11690Os.51765.1.S1_at9/1112+6343486..6346006expressed protein
LOC_Os12g11700OsAffx.31706.1.S1_at11/1112+6347630..6348766hypothetical protein
LOC_Os12g11710Os.55244.1.S1_at11/1112+6353046..6353637expressed protein
LOC_Os12g11720OsAffx.31705.2.S1_at4/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11720OsAffx.27330.1.S1_s_at1/1112+6355837..6358896Leucine Rich Repeat family protein
LOC_Os12g11730NANA12+6361141..6364552retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31705.2.S1_at--717--9692Chr12:6584729..6584753 (25 bp)
TCACTCGTGCTGATTGATGTCTCAA
LOC_Os12g12010
OsAffx.31705.2.S1_at--1033--352Chr12:6584754..6584778 (25 bp)
ATAATGATTTCCACGGTAGCATCCC
LOC_Os12g12010
OsAffx.31705.2.S1_at--623--5472Chr12:6584792..6584816 (25 bp)
GAACTTGCGTTGCTTCACGGGCTCA
LOC_Os12g12010
OsAffx.31705.2.S1_at--779--3091Chr12:6342439..6342463 (25 bp)
AATATGCTTACAGGGCCAATTCCAA
LOC_Os12g11680
OsAffx.31705.2.S1_at--252--9792Chr12:6584902..6584926 (25 bp)
TAAGCTTTCCAATGAGATCCCAGAG
LOC_Os12g12010
OsAffx.31705.2.S1_at--967--5393Chr12:6584926..6584950 (25 bp)
GAAGCTAGCATCACTGAACTTTCTT
LOC_Os12g12010
OsAffx.31705.2.S1_at--538--3054Chr12:6649034..6649058 (25 bp)
AATCGTCACACTTCTCGACATTTTC
LOC_Os12g12120
OsAffx.31705.2.S1_at--585--7292Chr12:6585052..6585076 (25 bp)
GTGCGGAGCCCCATTGTCTAAACAA
LOC_Os12g12010
OsAffx.31705.2.S1_at--837--414Chr12:6649138..6649162 (25 bp)
ATCATGCCACATGCTTCCAAGAAGG
LOC_Os12g12120
OsAffx.31705.2.S1_at--762--9894Chr12:6649178..6649202 (25 bp)
TACTTTTTCTCTTCACTGGGTTGGG
LOC_Os12g12120
OsAffx.31705.2.S1_at--53--6536Chr12:6649202..6649226 (25 bp)
GATTTGGTGTCTGCTTTGGAATTAC
LOC_Os12g12120
Target Sequence 
TCACTCGTGCTGATTGATGTCTCAAATAATGATTTCCACGGTAGCATCCCGTCAAGCATTGGGGAACTTGCGTTGCTTCA
CGGGCTCAACATGTCTCGTAATATGCTTACAGGGCCAATTCCAACTCAGTTTGGCAACTTGAACAACCTTGAGTCTTTGG
ACCTCTCCTCAAATAAGCTTTCCAATGAGATCCCAGAGAAGCTAGCATCACTGAACTTTCTTGCAACATTGAATCTGTCC
TATAATATGTTGGCTGGAAGAATACCACAATCGTCACACTTCTCGACATTTTCCAATGCCTCTTTTGAGGGAAATATTGG
GCTGTGCGGAGCCCCATTGTCTAAACAATGTAGCTATCGATCTGAACCAAACATCATGCCACATGCTTCCAAGAAGGACC
CGATAGATGTTCTACTTTTTCTCTTCACTGGGTTGGGATTTGGTGTCTGCTTTGGAATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31705.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis