Browse Element(s) Details


OsAffx.3174.1.S1_at

Description tigr:9631.m00799
TID=OsAffx.3174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0854010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed
LOC_Os03g08500Os.12889.1.S1_x_at11/113+4351353..4352577AP2 domain containing protein, expressed
LOC_Os03g08510OsAffx.25020.1.S1_at11/113+4356986..4357174hypothetical protein
LOC_Os03g08520Os.51546.1.S1_at11/113+4358785..4359853expressed protein
LOC_Os03g08530OsAffx.12783.1.S1_at11/113+4363730..4368503Alanine aminotransferase 2, putative, expressed
LOC_Os03g08540OsAffx.3174.1.S1_at10/113+4369289..4372130hypothetical protein
LOC_Os03g08550Os.9080.1.S1_at11/113+4376362..4382056leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g08560OsAffx.12784.1.S1_at11/113+4382356..4387421ATPase 10, plasma membrane-type, putative
LOC_Os03g08570Os.2330.1.S1_at11/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08570OsAffx.7731.1.S1_at1/113+4388192..4393919Phytoene dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os03g08580Os.21260.1.S1_at11/113+4395750..4398234expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3174.1.S1_at--141--8531Chr03:4369619..4369643 (25 bp)
TGGACCAGGCCGGATCTAGTTGAAA
LOC_Os03g08540
OsAffx.3174.1.S1_at--471--3691NONE
CTAGTTGAAATAGGCCCGTTCGCTA
NONE
OsAffx.3174.1.S1_at--925--9911Chr03:4370977..4371001 (25 bp)
TACTGCCATTGCCAACCTTAAATGC
LOC_Os03g08540
OsAffx.3174.1.S1_at--416--5311Chr03:4371004..4371028 (25 bp)
GAAGGATCTCTTCTCATCAGCAGAT
LOC_Os03g08540
OsAffx.3174.1.S1_at--362--3111Chr03:4371650..4371674 (25 bp)
AATATGTTACTGTCTTCTCAAGGTC
LOC_Os03g08540
OsAffx.3174.1.S1_at--443--7811Chr03:4371671..4371780 (25 bp)
GGTCTGCCTGACAATTTCACGGATG
LOC_Os03g08540
OsAffx.3174.1.S1_at--188--371Chr03:4371793..4371817 (25 bp)
ATCAATACCTCTGCAATTCAGGCCT
LOC_Os03g08540
OsAffx.3174.1.S1_at--111--5251Chr03:4371880..4371904 (25 bp)
GAATAATTGCCTCCTTGGCATCTGA
LOC_Os03g08540
OsAffx.3174.1.S1_at--449--9011Chr03:4371902..4371926 (25 bp)
TGAATCCTCCCCATGCAGAAATGCA
LOC_Os03g08540
OsAffx.3174.1.S1_at--919--951Chr03:4372039..4372063 (25 bp)
AGGACTATGACTATCTGCCTCACAT
LOC_Os03g08540
OsAffx.3174.1.S1_at--148--9191Chr03:4372054..4372078 (25 bp)
TGCCTCACATGCAGCTTGACAAGGT
LOC_Os03g08540
Target Sequence 
TGGACCAGGCCGGATCTAGTTGAAATAGGCCCGTTCGCTACTGCCATTGCCAACCTTAAATGCGAGAAGGATCTCTTCTC
ATCAGCAGATACCATCTTCATAGAAGCAACGATAACACAGGAAGAAGAATGCACTCAAGTTTCAAATAAGACAACTTCAA
GTAGTCCTGAGAATATGTTACTGTCTTCTCAAGGTCTGCCTGACAATTTCACGGATGAAGCAACAAAGGATCAATACCTC
TGCAATTCAGGCCTCCAAGCTGCAAATCGAGAATCGAAGAAGAAGAACTCGACGTTCTTGACAAAGTTTCAGAACAGAAT
AATTGCCTCCTTGGCATCTGAATCCTCCCCATGCAGAAATGCATTCCGCAGACCGCTCCTCTCTAGGGAGATAGTAGTCA
GAGAATACTTCAAATTGGCTCGGATTATCAGACGAACAGCTGCAGCCTGCTTCTCGCCATCGTCAGATGCTGATGAGGAC
TATGACTATCTGCCTCACATGCAGCTTGACAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis