Browse Element(s) Details


OsAffx.31759.1.S1_at

Description tigr:9640.m01574
TID=OsAffx.31759.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1616010/11CCT motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16120OsAffx.31758.1.S1_at9/1112+9202679..9204272hypothetical protein
LOC_Os12g16130Os.25420.1.S1_at11/1112+9206998..9209041hAT family dimerisation domain containing protein, expressed
LOC_Os12g16140Os.31845.1.S1_x_at1/1112+9214216..9217417hypothetical protein
LOC_Os12g16150OsAffx.22699.1.S1_x_at2/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150OsAffx.8279.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150Os.52731.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16160OsAffx.31759.1.S1_at10/1112+9227564..9228751CCT motif family protein
LOC_Os12g16170OsAffx.31760.1.S1_at11/1112+9234378..9235199hypothetical protein
LOC_Os12g16180Os.52925.1.S1_at11/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16180Os.4506.3.S1_x_at1/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16190OsAffx.19700.1.S1_at11/1112+9252367..9253584hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31759.1.S1_at--643--1091Chr12:9228616..9228640 (25 bp)
AGTGGCAGTAGCACCTCCTCGTCTT
LOC_Os12g16160
OsAffx.31759.1.S1_at--949--451Chr12:9228587..9228611 (25 bp)
ATCTCGTCCATTCAATAGTGTCAGG
LOC_Os12g16160
OsAffx.31759.1.S1_at--141--7111Chr12:9228568..9228592 (25 bp)
GTCAGGATGGATGGTGCCGTCTTAC
LOC_Os12g16160
OsAffx.31759.1.S1_at--680--1631Chr12:9228514..9228538 (25 bp)
AGCGACCACTCACCGACGAAGGAGG
LOC_Os12g16160
OsAffx.31759.1.S1_at--228--8071Chr12:9228417..9228441 (25 bp)
GGAGCAAGCGAAACCACCGCAACTT
LOC_Os12g16160
OsAffx.31759.1.S1_at--60--5571NONE
GAAAGGAAGATCACCTATGCTTGCC
NONE
OsAffx.31759.1.S1_at--456--9151Chr12:9227771..9227795 (25 bp)
TGCCGACGGCAGTCAATCGACGGGA
LOC_Os12g16160
OsAffx.31759.1.S1_at--498--151Chr12:9227747..9227771 (25 bp)
ATTAGCAGAAGTAGTGTCCTCACCG
LOC_Os12g16160
OsAffx.31759.1.S1_at--797--1791Chr12:9227726..9227750 (25 bp)
ACCGCTGGCAACGACCAATGCAATG
LOC_Os12g16160
OsAffx.31759.1.S1_at--387--3011Chr12:9227710..9227734 (25 bp)
AATGCAATGTGCAATGACGACGACG
LOC_Os12g16160
OsAffx.31759.1.S1_at--438--8931Chr12:9227672..9227696 (25 bp)
TGACTTACCCGAGTGGTGGCCAGCA
LOC_Os12g16160
Target Sequence 
AGTGGCAGTAGCACCTCCTCGTCTTCCTCATCTCGTCCATTCAATAGTGTCAGGATGGATGGTGCCGTCTTACCAGTCTC
GTCTCGTCAACCGCCGCCGTCCAGCGACCACTCACCGACGAAGGAGGAGCTTCCGAGGGCGACGGCGGCGGTGGGAAGGT
ACAGTGCGGAGGAGCGGCAGGAGCGCATTGAGAAGTACCGGAGCAAGCGAAACCACCGCAACTTCGAAAGGAAGATCACC
TATGCTTGCCGGAAGACGCTCGCCGACAGCCGGCCTAGGGTGAAGGGCCGTTTCGCCCGCAACTCCACCACCGGCGATGC
TGCCGACGGCAGTCAATCGACGGGATTAGCAGAAGTAGTGTCCTCACCGCTGGCAACGACCAATGCAATGTGCAATGACG
ACGACGACGGTGGCAGCGGTGACTTACCCGAGTGGTGGCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31759.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis