Browse Element(s) Details


OsAffx.31869.4.S1_at

Description gb:NM_196120.1
DB_XREF= gi:37533599
TID=OsAffx.31869.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OJ1208D02.15), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2262011/11retrotransposon protein, putative, unclassified
LOC_Os03g3237011/11retrotransposon protein, putative, unclassified
LOC_Os06g386039/11retrotransposon protein, putative, unclassified
LOC_Os12g234209/11retrotransposon protein, putative, unclassified
LOC_Os05g243709/11retrotransposon protein, putative, unclassified
LOC_Os05g243809/11retrotransposon protein, putative, unclassified
LOC_Os04g139509/11retrotransposon protein, putative, unclassified
LOC_Os01g232309/11retrotransposon protein, putative, unclassified
LOC_Os05g298409/11retrotransposon protein, putative, unclassified
LOC_Os04g444906/11retrotransposon protein, putative, unclassified
LOC_Os07g192406/11retrotransposon protein, putative, unclassified
LOC_Os02g219505/11retrotransposon protein, putative, unclassified
LOC_Os07g163604/11retrotransposon protein, putative, unclassified
LOC_Os06g273904/11retrotransposon protein, putative, unclassified
LOC_Os09g136404/11retrotransposon protein, putative, unclassified
LOC_Os05g424322/11retrotransposon protein, putative, unclassified
LOC_Os03g613702/11retrotransposon protein, putative, unclassified
LOC_Os05g179002/11retrotransposon protein, putative, unclassified
LOC_Os10g242902/11retrotransposon protein, putative, unclassified
LOC_Os05g204902/11retrotransposon protein, putative, unclassified
LOC_Os02g300002/11retrotransposon protein, putative, unclassified
LOC_Os07g179201/11retrotransposon protein, putative, unclassified
LOC_Os08g117401/11retrotransposon protein, putative, unclassified
LOC_Os04g053401/11retrotransposon protein, putative, unclassified
LOC_Os06g149901/11retrotransposon protein, putative, unclassified
LOC_Os12g224301/11retrotransposon protein, putative, unclassified
LOC_Os09g030601/11retrotransposon protein, putative, unclassified
LOC_Os11g279501/11retrotransposon protein, putative, unclassified
LOC_Os10g030201/11retrotransposon protein, putative, unclassified
LOC_Os04g077301/11retrotransposon protein, putative, unclassified
LOC_Os12g224201/11retrotransposon protein, putative, unclassified
LOC_Os12g183101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g235001/11retrotransposon protein, putative, unclassified
LOC_Os11g263701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g195101/11retrotransposon protein, putative, unclassified
LOC_Os02g296901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22590Os.5297.1.S1_at11/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22590Os.3577.1.S1_x_at2/1110+11392043..11394977Pollen proteins Ole e I family protein, expressed
LOC_Os10g22600OsAffx.20436.1.S1_x_at11/1110+11400208..11401173AP2 domain containing protein, expressed
LOC_Os10g22610Os.4183.1.S1_a_at1/1110+11411238..11411871hypothetical protein
LOC_Os10g22620OsAffx.31869.4.S1_x_at11/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.4.S1_at11/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.3.S1_s_at4/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.3.S1_x_at4/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620OsAffx.31869.5.S1_x_at3/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22620Os.48015.1.A1_at1/1110+11415726..11417070retrotransposon protein, putative, unclassified
LOC_Os10g22630Os.5353.1.S1_at11/1110+11426685..11428017expressed protein
LOC_Os10g22630OsAffx.6388.1.A1_x_at1/1110+11426685..11428017expressed protein
LOC_Os10g22640NANA10+11433620..11439775retrotransposon protein, putative, unclassified
LOC_Os10g22650Os.28943.1.S1_x_at1/1110+11440409..11443587transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.4.S1_at--317--734Chr10:11416549..11416573 (25 bp)
ATGTTGATCTCCCATGACTATGTTG
LOC_Os10g22620
OsAffx.31869.4.S1_at--944--88118Chr12:10564156..10564531 (25 bp)
TGTTGATCTCCCATGACTATGTTGA
LOC_Os12g18310
OsAffx.31869.4.S1_at--535--22313Chr10:11416706..11416730 (25 bp)
AAATTGGTGAATCTTTTTCTGCAGG
LOC_Os10g22620
OsAffx.31869.4.S1_at--521--77714Chr10:11416711..11416735 (25 bp)
GGTGAATCTTTTTCTGCAGGTCAAG
LOC_Os10g22620
OsAffx.31869.4.S1_at--1040--52314Chr10:11416714..11416738 (25 bp)
GAATCTTTTTCTGCAGGTCAAGAAC
LOC_Os10g22620
OsAffx.31869.4.S1_at--629--103115Chr10:11416721..11416745 (25 bp)
TTTCTGCAGGTCAAGAACAGTCACA
LOC_Os10g22620
OsAffx.31869.4.S1_at--347--10315Chr10:11416728..11416752 (25 bp)
AGGTCAAGAACAGTCACAACAACAG
LOC_Os10g22620
OsAffx.31869.4.S1_at--1--6514Chr10:11417000..11417024 (25 bp)
ATGCAGTGCCGGTTGCGTCTCAAGG
LOC_Os10g22620
OsAffx.31869.4.S1_at--48--91914Chr10:11417006..11417030 (25 bp)
TGCCGGTTGCGTCTCAAGGGATACA
LOC_Os10g22620
OsAffx.31869.4.S1_at--5--66916Chr10:11417011..11417035 (25 bp)
GTTGCGTCTCAAGGGATACAGCTCA
LOC_Os10g22620
OsAffx.31869.4.S1_at--791--71517Chr10:11417016..11417040 (25 bp)
GTCTCAAGGGATACAGCTCAGCCAT
LOC_Os10g22620
Target Sequence 
ATGTTGATCTCCCATGACTATGTTGATTTTCAGCAGCTGGTTGACAAAGCAATTCGACTTGAAGACAAGAATAACAGGAT
GGATAACCGTAAAAGGAAAATGATTGTATTCCAGGAGGCACAGGATAGTAGCCAGAGGCAGCGTATCAAGCCACTCCAAA
TTGGTGAATCTTTTTCTGCAGGTCAAGAACAGTCACAACAACAGTCACAACAGTTGGGCATCAGTGGTGAGATCAACTCA
GAGACTAATGCAAGCAATGAAGACAATGATGAGCAAGCTACTCAATCAGTGTCATTTCAGCAGGATCAGTCTCAAGAAGA
TAACAGTAATGGAAGGGAGCATCGGGTGTGTTTCAATTGTTATGAGCCAGGTCACTTCGTAAAAGAGTGTCCGAAGCCGA
AGCGTCAACAGCCACAAGGCCAAGTCAACAACATTGTCCTCACAGGAGCAAATGCAGTGCCGGTTGCGTCTCAAGGGATA
CAGCTCAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis