Browse Element(s) Details


OsAffx.3190.1.S1_at

Description tigr:9631.m00975
TID=OsAffx.3190.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g106002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10540Os.53165.1.S1_at11/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10540OsAffx.3188.1.S1_at5/113+5352085..5358532F-box domain containing protein, expressed
LOC_Os03g10550OsAffx.12809.1.S1_at9/113+5359417..5360291hypothetical protein
LOC_Os03g10570OsAffx.20947.1.S1_x_at2/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570Os.9810.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10570OsAffx.20947.1.S1_at1/113+5363887..5369718meiotic asynaptic mutant 1, putative
LOC_Os03g10580NANA3+5370007..5372163meiotic asynaptic mutant 1, putative
LOC_Os03g10590Os.16689.1.S1_at11/113+5373048..5376102somatic embryogenesis related protein, putative, expressed
LOC_Os03g10600Os.24224.1.A1_at11/113+5380075..5385984expressed protein
LOC_Os03g10600OsAffx.3190.1.S1_at2/113+5380075..5385984expressed protein
LOC_Os03g10610Os.11595.1.S2_at2/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.13325.1.S1_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10610OsAffx.10155.1.S1_x_at1/113+5397127..5399081retrotransposon protein, putative, unclassified
LOC_Os03g10620Os.11186.1.S1_at11/113+5401321..5405247hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g10630OsAffx.12810.1.S1_at9/113+5410221..5411099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3190.1.S1_at--1085--8271Chr03:5385075..5385385 (25 bp)
GGCATAACACGAGGGTCCATGCCGA
LOC_Os03g10600
OsAffx.3190.1.S1_at--480--3971Chr03:5385490..5385709 (25 bp)
CGTCTTATTCTGCATTTAAAGCTCA
LOC_Os03g10600
OsAffx.3190.1.S1_at--1161--3051Chr03:5385824..5386001 (25 bp)
AATCACAACTTGGTGCTAACAATGA
NONE
OsAffx.3190.1.S1_at--440--6271Chr03:5386006..5386030 (25 bp)
GATGATACGGTTCTAAATGAGGTTA
NONE
OsAffx.3190.1.S1_at--727--6151Chr03:5386024..5386045 (22 bp)
GAGGTTATAATTTCTCCGAAGGAGG
NONE
OsAffx.3190.1.S1_at--207--10231NONE
TTTGGATTATCCACGTTGCGATACG
NONE
OsAffx.3190.1.S1_at--635--9131Chr03:5386459..5386483 (25 bp)
TGCGATACGTGGTCAGTGTCAATTC
NONE
OsAffx.3190.1.S1_at--994--7111Chr03:5386470..5386494 (25 bp)
GTCAGTGTCAATTCGTGGCCACGAG
NONE
OsAffx.3190.1.S1_at--464--9431Chr03:5386482..5386506 (25 bp)
TCGTGGCCACGAGAGAATATCTGAG
NONE
OsAffx.3190.1.S1_at--20--2651Chr03:5386530..5386554 (25 bp)
AACCATGGAAGGTGTGATGTGCTAC
NONE
OsAffx.3190.1.S1_at--1150--931Chr03:5386574..5386598 (25 bp)
AGGAATTAGGTGGATGCGGCAACAA
NONE
Target Sequence 
GGCATAACACGAGGGTCCATGCCGAACAACTTTTGCAAATCTGGTGCAGGACTACAAATTACACTTCCAGTATCAGGGCA
AAATCTAGTCAAACTTGCTAAAGGCTTTTTGGAGCATTTGATGTTGATCCGTCTTATTCTGCATTTAAAGCTCATCAAAT
TAATCTGCTGGATTTGGAACAAGATGAAAAGGAGCAAACAAGAAAATGAGCTTAGTAATCAAGATGAGAAGGACTTGGTG
ATCTGCAGCCTTTGGCTCTTGTTCCATAAATCACAACTTGGTGCTAACAATGATAAAGATGATACGGTTCTAAATGAGGT
TATAATTTCTCCGAAGGAGGTTTTGGATTATCCACGTTGCGATACGTGGTCAGTGTCAATTCGTGGCCACGAGAGAATAT
CTGAGGTGATTGGAGGAGGGGATAAGGGAACCATGGAAGGTGTGATGTGCTACACATGGTGGGGGCATGCGGAGGAATTA
GGTGGATGCGGCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis