Browse Element(s) Details


OsAffx.31960.1.S1_at

Description tigr:9640.m03033
TID=OsAffx.31960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3134011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31280Os.14491.2.S1_x_at4/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.47463.1.S1_x_at3/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280Os.36736.1.S1_x_at1/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31280OsAffx.18435.1.S1_x_at1/1112+18796503..18798050transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g31290OsAffx.31959.1.S1_at10/1112+18802839..18804569hypothetical protein
LOC_Os12g31300NANA12+18806088..18808337retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31310NANA12+18811539..18811971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g31320OsAffx.28901.1.S1_x_at11/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.2.S1_x_at2/1112+18816273..18817103hypothetical protein
LOC_Os12g31320OsAffx.28901.4.S1_x_at1/1112+18816273..18817103hypothetical protein
LOC_Os12g31330OsAffx.7752.1.S1_at11/1112+18818470..18819056hypothetical protein
LOC_Os12g31340OsAffx.31960.1.S1_at11/1112+18822500..18824193F-box domain containing protein, expressed
LOC_Os12g31350Os.8856.1.S1_at11/1112+18827079..18832070SSXT protein containing protein, expressed
LOC_Os12g31360NANA12+18839838..18840204hypothetical protein
LOC_Os12g31370Os.19630.1.S1_at11/1112+18847550..18850637DNA repair protein RAD51 homolog B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31960.1.S1_at--834--1611Chr12:18823241..18823265 (25 bp)
AGCTGGAGACTATTGGTTGCCTTAC
LOC_Os12g31340
OsAffx.31960.1.S1_at--533--4311Chr12:18823222..18823246 (25 bp)
CCTTACAGATCGATGGTTTGGCCCA
LOC_Os12g31340
OsAffx.31960.1.S1_at--1002--10411Chr12:18823068..18823092 (25 bp)
TTAGGTTGACAGAGGCCGTGCGCAC
LOC_Os12g31340
OsAffx.31960.1.S1_at--135--8431Chr12:18823055..18823079 (25 bp)
GGCCGTGCGCACTATGAGGATTTTA
LOC_Os12g31340
OsAffx.31960.1.S1_at--247--5691Chr12:18822991..18823015 (25 bp)
GACTTGATGAGATGCTTTCCATGCT
LOC_Os12g31340
OsAffx.31960.1.S1_at--877--8991Chr12:18822855..18822876 (22 bp)
TGAAGTGTTGTCTATCTGCTGGAAA
LOC_Os12g31340
OsAffx.31960.1.S1_at--687--8371Chr12:18822822..18822846 (25 bp)
GGCGTTGTGAATACCAGACTCTTAT
LOC_Os12g31340
OsAffx.31960.1.S1_at--764--2191Chr12:18822737..18822761 (25 bp)
ACAAATCGACTTTGCCCAGTTCTTT
LOC_Os12g31340
OsAffx.31960.1.S1_at--903--1291Chr12:18822598..18822622 (25 bp)
AGATGTGCGCGTTTCAAGTTTACCA
LOC_Os12g31340
OsAffx.31960.1.S1_at--248--6831Chr12:18822581..18822605 (25 bp)
GTTTACCACTGATAGATGCCACCAT
LOC_Os12g31340
OsAffx.31960.1.S1_at--368--651Chr12:18822555..18822579 (25 bp)
ATGCAGATCCTGAATGTCCTATAGA
LOC_Os12g31340
Target Sequence 
AGCTGGAGACTATTGGTTGCCTTACAGATCGATGGTTTGGCCCAAGGATCATGTTTGGCACTACAACTGTTGTCAAGGGA
GTGAGTGTTGTTAGGTTGACAGAGGCCGTGCGCACTATGAGGATTTTAGCAATCAATATGTTTGTTCTTAATCTGGCTAA
GGTGATTGACTTGATGAGATGCTTTCCATGCTTGGAGAAATTGTACTTGAAGTGTTGTCTATCTGCTGGAAATAATTATT
GGCGTTGTGAATACCAGACTCTTATCAAAATCCTTGATATCCGTCTGAAGACAGTGGAGTTGGAAAATTACCGGGGAACC
AAGCCACAAATCGACTTTGCCCAGTTCTTTGTACTTAATGGTAAAGTGCTAGAGTCTATGAAATTTGTGGTAAAGTCTGA
AGATTACTATGATGGGTTTGTTGCAAAACAACATAAGATGCTTCAGCTCGACAAAAGGGCTTCGAGATGTGCGCGTTTCA
AGTTTACCACTGATAGATGCCACCATCATGCAGATCCTGAATGTCCTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis