Browse Element(s) Details


OsAffx.31965.1.S1_at

Description tigr:9640.m03064
TID=OsAffx.31965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3163011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31610OsAffx.7756.1.S1_at10/1112+19007058..19010389Protein kinase domain containing protein
LOC_Os12g31620Os.53963.1.S1_at11/1112+19015194..19020019NB-ARC domain containing protein, expressed
LOC_Os12g31630OsAffx.31965.1.S1_at11/1112+19023918..19025435expressed protein
LOC_Os12g31640Os.48088.1.S1_at11/1112+19027183..19032412Vacuolar protein sorting 26, putative, expressed
LOC_Os12g31650Os.2987.3.S1_x_at4/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31650Os.53731.1.S1_at1/1112+19035369..19038769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g31660Os.52525.1.S1_at11/1112+19041293..19043885transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g31670OsAffx.19918.1.S1_at11/1112+19046562..19047050expressed protein
LOC_Os12g31680NANA12+19049108..19049794hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31965.1.S1_at--445--1011Chr12:19024874..19024898 (25 bp)
AGGTAAACACGTGGTCAGCCTGTAC
LOC_Os12g31630
OsAffx.31965.1.S1_at--663--1431Chr12:19024930..19024954 (25 bp)
AGAACAGCTACGTCGATGCGCAGTG
LOC_Os12g31630
OsAffx.31965.1.S1_at--1067--2131Chr12:19025047..19025071 (25 bp)
ACAGTTCTGGGCGAGTGGTTCTTGC
LOC_Os12g31630
OsAffx.31965.1.S1_at--31--8591Chr12:19025062..19025086 (25 bp)
TGGTTCTTGCCCTGAGTCGTCATAT
LOC_Os12g31630
OsAffx.31965.1.S1_at--280--7211Chr12:19025077..19025101 (25 bp)
GTCGTCATATAGATCGCTGCGGCAG
LOC_Os12g31630
OsAffx.31965.1.S1_at--580--10851Chr12:19025106..19025130 (25 bp)
TTGGAGGCCGAGCTCCTAGCTTGTA
LOC_Os12g31630
OsAffx.31965.1.S1_at--1045--2731Chr12:19025131..19025155 (25 bp)
AAGAAGGTCTGAGTCTCGCTCTGCA
LOC_Os12g31630
OsAffx.31965.1.S1_at--614--9051Chr12:19025152..19025176 (25 bp)
TGCAGTACACTCTGTTGCCCTTAGT
LOC_Os12g31630
OsAffx.31965.1.S1_at--934--6671Chr12:19025165..19025189 (25 bp)
GTTGCCCTTAGTCCTAGAGACTGAC
LOC_Os12g31630
OsAffx.31965.1.S1_at--232--7231Chr12:19025234..19025258 (25 bp)
GTCGCCGGAGGTTTTTATTATCAGA
LOC_Os12g31630
OsAffx.31965.1.S1_at--904--8431Chr12:19025307..19025331 (25 bp)
GGCCAGCGTTCGCAGAATCGAGTTA
LOC_Os12g31630
Target Sequence 
AGGTAAACACGTGGTCAGCCTGTACACACCAAAATCCACCAGGGGGCGAAGCGACCAGAACAGCTACGTCGATGCGCAGT
GGGTTAAACCGCAAGGGGGATGGATGAAAATCAACACGGATGGATCGTGTGACAGTAAAAATGGCAATGGGGGTGTGGGT
GCTGTCGTGAGAGACAGTTCTGGGCGAGTGGTTCTTGCCCTGAGTCGTCATATAGATCGCTGCGGCAGTGCTTTGGAGGC
CGAGCTCCTAGCTTGTAAAGAAGGTCTGAGTCTCGCTCTGCAGTACACTCTGTTGCCCTTAGTCCTAGAGACTGACTGCC
TGGAGGCTTTGAAGCTGTTAAAGAGCAAGGAGAAGGTGATGTCGCCGGAGGTTTTTATTATCAGAGAGGCCAATTCTCTG
CTTCAGGGGAATAGGGAGATTAAGTTTAGTAAAGGCCAGCGTTCGCAGAATCGAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis