Browse Element(s) Details


OsAffx.31981.1.S1_at

Description tigr:9640.m03151
TID=OsAffx.31981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3243411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32380Os.10442.1.S1_at11/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380OsAffx.31979.1.S1_at8/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380Os.9437.1.S1_at3/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32390NANA12+19515305..19515885expressed protein
LOC_Os12g32400OsAffx.31980.1.S1_at11/1112+19518026..19519034Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g32410OsAffx.23442.1.S1_at1/1112+19521895..19523701retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32420OsAffx.20387.1.S1_x_at2/1112+19524176..19527561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32430OsAffx.17106.1.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32430Os.25754.2.S1_x_at1/1112+19529092..19531519retrotransposon protein, putative, unclassified
LOC_Os12g32434OsAffx.31981.1.S1_x_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32434OsAffx.31981.1.S1_at11/1112+19535492..19536601hypothetical protein
LOC_Os12g32440Os.41248.4.S1_x_at3/1112+19540387..19546403retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g32450OsAffx.7768.1.S1_at11/1112+19550313..19556635expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31981.1.S1_at--391--6251Chr12:19536427..19536571 (25 bp)
GATGGTTTCATTAGCTGCAGGAAGC
LOC_Os12g32434
OsAffx.31981.1.S1_at--997--811Chr12:19536426..19536570 (25 bp)
ATGGTTTCATTAGCTGCAGGAAGCA
LOC_Os12g32434
OsAffx.31981.1.S1_at--1062--8571Chr12:19536425..19536569 (25 bp)
TGGTTTCATTAGCTGCAGGAAGCAG
LOC_Os12g32434
OsAffx.31981.1.S1_at--157--8211Chr12:19536347..19536371 (25 bp)
GGAAGGCGACGAGGCATGCCTACGA
LOC_Os12g32434
OsAffx.31981.1.S1_at--270--5291Chr12:19536346..19536370 (25 bp)
GAAGGCGACGAGGCATGCCTACGAC
LOC_Os12g32434
OsAffx.31981.1.S1_at--231--2951Chr12:19536345..19536369 (25 bp)
AAGGCGACGAGGCATGCCTACGACG
LOC_Os12g32434
OsAffx.31981.1.S1_at--651--851Chr12:19536344..19536368 (25 bp)
AGGCGACGAGGCATGCCTACGACGC
LOC_Os12g32434
OsAffx.31981.1.S1_at--316--4611Chr12:19536342..19536366 (25 bp)
GCGACGAGGCATGCCTACGACGCGT
LOC_Os12g32434
OsAffx.31981.1.S1_at--889--1871Chr12:19536339..19536363 (25 bp)
ACGAGGCATGCCTACGACGCGTCGA
LOC_Os12g32434
OsAffx.31981.1.S1_at--1089--4051Chr12:19536338..19536362 (25 bp)
CGAGGCATGCCTACGACGCGTCGAG
LOC_Os12g32434
OsAffx.31981.1.S1_at--667--4611Chr12:19536308..19536332 (25 bp)
GCGACCTGGTTCTCGTGGTGTCGCT
LOC_Os12g32434
Target Sequence 
GATGGTTTCATTAGCTGCAGGAAGCAGCGGCAGCAGCAGCCTGAGATGGAGAAGAAAGCGGCGGCGGCGGCGGAGGAGCA
GGAAGGCGACGAGGCATGCCTACGACGCGTCGAGCCATGGCGACCTGGTTCTCGTGGTGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis