Browse Element(s) Details


OsAffx.31989.1.S1_at

Description tigr:9640.m03186
TID=OsAffx.31989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32730Os.46053.2.S1_x_at9/1112+19741136..19744310transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32740NANA12+19745551..19748883transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32750OsAffx.31989.1.S1_at11/1112+19750975..19758056expressed protein
LOC_Os12g32750Os.18223.1.S1_s_at11/1112+19750975..19758056expressed protein
LOC_Os12g32760Os.10344.1.S1_at10/1112+19759781..19762953Sugar transporter family protein, expressed
LOC_Os12g32770OsAffx.31309.1.S1_at6/1112+19763514..19765561expressed protein
LOC_Os12g32790Os.50920.1.A1_x_at11/1112+19777406..19781128NB-ARC domain containing protein, expressed
LOC_Os12g32790OsAffx.7771.1.S1_x_at8/1112+19777406..19781128NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009851biological_processauxin biosynthesis
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31989.1.S1_at--277--8391Chr12:19753539..19753868 (25 bp)
GGCGAAATAAAGGTGGTCCCAGCAA
LOC_Os12g32750
OsAffx.31989.1.S1_at--1044--4171Chr12:19753861..19753885 (25 bp)
CCCAGCAATACACTGCTTCACAGAG
LOC_Os12g32750
OsAffx.31989.1.S1_at--17--1491Chr12:19753864..19753888 (25 bp)
AGCAATACACTGCTTCACAGAGGAT
LOC_Os12g32750
OsAffx.31989.1.S1_at--320--9351Chr12:19753893..19753917 (25 bp)
TCGAATTCGTGAATGGCTGTAGGGA
LOC_Os12g32750
OsAffx.31989.1.S1_at--547--4731Chr12:19753908..19753932 (25 bp)
GCTGTAGGGAGGACTTTGATGCCGT
LOC_Os12g32750
OsAffx.31989.1.S1_at--451--10271Chr12:19753922..19753946 (25 bp)
TTTGATGCCGTCATCTTTGCCACTG
LOC_Os12g32750
OsAffx.31989.1.S1_at--1055--591Chr12:19753926..19753950 (25 bp)
ATGCCGTCATCTTTGCCACTGGATA
LOC_Os12g32750
OsAffx.31989.1.S1_at--126--4511Chr12:19753928..19753952 (25 bp)
GCCGTCATCTTTGCCACTGGATACA
LOC_Os12g32750
OsAffx.31989.1.S1_at--333--7131Chr12:19753931..19753955 (25 bp)
GTCATCTTTGCCACTGGATACAAAA
LOC_Os12g32750
OsAffx.31989.1.S1_at--625--7951Chr12:19753946..19753970 (25 bp)
GGATACAAAAGCAATGTGCCATCAT
LOC_Os12g32750
OsAffx.31989.1.S1_at--870--2191Chr12:19753950..19753974 (25 bp)
ACAAAAGCAATGTGCCATCATGGCT
LOC_Os12g32750
Target Sequence 
GGCGAAATAAAGGTGGTCCCAGCAATACACTGCTTCACAGAGGATGGGGTCGAATTCGTGAATGGCTGTAGGGAGGACTT
TGATGCCGTCATCTTTGCCACTGGATACAAAAGCAATGTGCCATCATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis