Browse Element(s) Details


OsAffx.32038.2.S1_at

Description tigr:9640.m01759
TID=OsAffx.32038.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1792011/11hypothetical protein
LOC_Os12g355402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17900Os.54189.1.S1_at11/1112+10278319..10284123armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os12g17910Os.8007.1.S1_at11/1112+10291015..10295321RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os12g17920OsAffx.32038.2.S1_at11/1112+10296940..10298139hypothetical protein
LOC_Os12g17920Os.24470.1.A1_at1/1112+10296940..10298139hypothetical protein
LOC_Os12g17930OsAffx.7627.1.S1_at11/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.23176.3.S1_x_at2/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.17424.1.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17930Os.19061.2.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17940OsAffx.31791.1.S1_at11/1112+10307836..10308297hypothetical protein
LOC_Os12g17950OsAffx.31792.1.S1_at11/1112+10318250..10319272hypothetical protein
LOC_Os12g17960OsAffx.31793.1.S1_at11/1112+10321824..10322060hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32038.2.S1_at--358--5371Chr12:10297041..10297065 (25 bp)
GAAGACCGGTTACGCGCAGATGCTC
LOC_Os12g17920
OsAffx.32038.2.S1_at--539--3212Chr12:21575489..21575513 (25 bp)
CAAGGGATGTGCGATCCAGCCAGTC
LOC_Os12g35540
OsAffx.32038.2.S1_at--1035--7991Chr12:10297077..10297101 (25 bp)
GGATGTGCGATCCAGCCAGTCGAAT
LOC_Os12g17920
OsAffx.32038.2.S1_at--872--7292Chr12:10297081..10297105 (25 bp)
GTGCGATCCAGCCAGTCGAATTCCT
LOC_Os12g17920
OsAffx.32038.2.S1_at--820--9731Chr12:10297113..10297546 (25 bp)
TAATATATATGGTTGCGTAGGTTGG
LOC_Os12g17920
OsAffx.32038.2.S1_at--768--9171Chr12:10297586..10297641 (25 bp)
TGCCGTATAGAGACGATGCTAGTTA
LOC_Os12g17920
OsAffx.32038.2.S1_at--980--1871Chr12:10297598..10297699 (25 bp)
ACGATGCTAGTTATATTGTTCAAGA
LOC_Os12g17920
OsAffx.32038.2.S1_at--55--9732Chr12:10297694..10297718 (25 bp)
TCAAGATCCTACATCGTGAAGATTG
LOC_Os12g17920
OsAffx.32038.2.S1_at--697--4291Chr12:10297701..10297725 (25 bp)
CCTACATCGTGAAGATTGGGACAAC
LOC_Os12g17920
OsAffx.32038.2.S1_at--894--6591Chr12:10297714..10297738 (25 bp)
GATTGGGACAACATCCGTATCAGGA
LOC_Os12g17920
OsAffx.32038.2.S1_at--301--9291Chr12:10297727..10298090 (25 bp)
TCCGTATCAGGATTGATGTTCTAGA
LOC_Os12g17920
Target Sequence 
GAAGACCGGTTACGCGCAGATGCTCCAACTTCCAAGGGATGTGCGATCCAGCCAGTCGAATTCCTCCATGCATAATATAT
ATGGTTGCGTAGGTTGGTTCTTTGAGAGTGTGATTGGGCGAATCCTTGGTTCAGGCTGCCGTATAGAGACGATGCTAGTT
ATATTGTTCAAGATCCTACATCGTGAAGATTGGGACAACATCCGTATCAGGATTGATGTTCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32038.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis